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GCTTACATCGCATAACTGTTATTCTCAACAACCTAAACCTCAACCTATTAAATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAGgttgttactctgactctcatctttgtggtcatttgtcgtttaatcactaaagcgaagaactgaagtgtgacatagctgttggcatctcttgtacag
species | Oryza sativa |
transcript | LOC_Os07g06950.1 |
intron # | 24 |
splice site | 5' |
intron type | U2 |
EST: AATACAGAGGTGTTGAGCGTTGGCTGGACATGCTGATTCACTATAACCAG ACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTAEST: gi|58661271|gb|CK049951.1|CK049951
genomic: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAGgttgttactc ... tcttgtacagACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTA
EST: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAG ACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTAEST: gi|66922652|gb|CX109500.1|CX109500
genomic: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAGgttgttactc ... tcttgtacagACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTA
EST: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAG ACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTAEST: gi|58659867|gb|CK048547.1|CK048547
genomic: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAGgttgttactc ... tcttgtacagACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTA
EST: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAG ACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTAEST: gi|58656552|gb|CK045232.1|CK045232
genomic: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAGgttgttactc ... tcttgtacagACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTA
EST: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAG ACTTCTGATATTCTTTACTATGAAGTATTGGATATAEST: gi|58654004|gb|CK042684.1|CK042684
genomic: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAGgttgttactc ... tcttgtacagACTTCTGATATTCTTTACTATGAAGTATTGGATATA
EST: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAG ACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTAEST: gi|88410434|gb|CI686365.1|CI686365
genomic: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAGgttgttactc ... tcttgtacagACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTA
EST: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAG ACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTAEST: gi|58658981|gb|CK047661.1|CK047661
genomic: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAGgttgttactc ... tcttgtacagACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTA
EST: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAG ACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTAEST: gi|58668010|gb|CK056696.1|CK056696
genomic: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAGgttgttactc ... tcttgtacagACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTA
EST: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAG ACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTAEST: gi|163920232|gb|EG710577.1|EG710577
genomic: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAGgttgttactc ... tcttgtacagACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTA
EST: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAG ACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTA
genomic: AATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAGgttgttactc ... tcttgtacagACTTCTGATATTCTTTACTATGAAGTATTGGATATACCACTCCCAGAATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTACATCGCATAACTGTTATTCTCAACAACCTAAACCTCAACCTATTAAATACAGAGGTGTTGAGCGTTTGCTGGACATGCTGATTCACTATAACCAGgttgttactctgactctcatctttgtggtcatttgtcgtttaatcactaaagcgaagaactgaagtgtgacatagctgttggcatctcttgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT