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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGTCAGGCAGGTAGACCCAAGACAATCACTGGATTCCAGACACATTCAACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactataacatctggagtacaatattctaatttgtcagttgatctttgcttatgcttatgcttatgctctttctatgtgcag

Basic information

species Oryza sativa
transcript LOC_Os06g48640.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g48640.1 (Oryza sativa), 5'ss of exon 24
lower sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 22
TCGGTCAGGCAGGTAGACCCAAGACAATCACTGGATTCCAGACACATTCAACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactat------aacatctggagtacaatattctaatttgtcagttgatctttgctt---atgcttatgcttatg----ctctttctatgtgcag-------
| || ||||||||  |||| |||||||||||||| ||||| || || ||||| |||||  | |||||||| |||||| |||| || || ||||| || |||||   | |      ||   |     |||| ||| ||| |     | |  | || || ||   ||  |      ||      ||||   | | |   |       
TTGGACAGGCAGGCCGACCTAAGACAATCACTGGGTTCCAAACGCACTCAACACCTGTTCTCCTTGCTGCTGGGGAGAGAGCTGAACTCGCAACCGAGAAgtatgttgttcctctaatccccttgttacattatcctactcga--aataaaactctgttttacatattggaatctaaaaaaactctgcttctttttgggtcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|3763867|gb|AU030606.1|AU030606
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|58607248|gb|CK035281.1|CK035281
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|86250853|gb|CI007716.1|CI007716
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|87029762|gb|CI274443.1|CI274443
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|87017863|gb|CI273885.1|CI273885
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|87029761|gb|CI274442.1|CI274442
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|86482172|gb|CI124805.1|CI124805
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|86592885|gb|CI270442.1|CI270442
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88215493|gb|CI215342.1|CI215342
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|86479314|gb|CI121947.1|CI121947
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|87040600|gb|CI195222.1|CI195222
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGTGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88250701|gb|CI348931.1|CI348931
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88380348|gb|CI518718.1|CI518718
EST:     ACGCCTTTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|86841640|gb|CI337347.1|CI337347
EST:     ACGCCTGTATTACTTGCTACAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88970161|gb|CI383663.1|CI383663
EST:     CGCCTGTATTACTTGCTGGCAGGGGAGCGAGCAGAGCTGGCAACTGGAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: CGCCTGTATTACTTGCT-GCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88278838|gb|CI397642.1|CI397642
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTTTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|86835577|gb|CI348034.1|CI348034
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88263909|gb|CI367683.1|CI367683
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88264609|gb|CI368383.1|CI368383
EST:     CGCCTGTATTACTTGCTGCAGGGGAGGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTGCCACTGACACCAGTTCTTGAGGTGTTTTGTGATCCTAAGGAAGA
genomic: CGCCTGTATTACTTGCTGCAGGGGA-GCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGG-GTTTTGTGATCCTAAGGAAGA
EST: gi|86477471|gb|CI120104.1|CI120104
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         AGATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|87021440|gb|CI274047.1|CI274047
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|86415944|gb|CI029955.1|CI029955
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88198325|gb|CI198175.1|CI198175
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|58609378|gb|CK037411.1|CK037411
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88274238|gb|CI394644.1|CI394644
EST:     CGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: CGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGA-GCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88198398|gb|CI198248.1|CI198248
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88829054|gb|CI073924.1|CI073924
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88845535|gb|CI084460.1|CI084460
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88417792|gb|CI535951.1|CI535951
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|87036422|gb|CI191044.1|CI191044
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|325493638|gb|JG458162.1|JG458162
EST:     CGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTTGAAAA                         ATATCTTCCACTGACACCA
genomic: CGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACT-GAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCA
EST: gi|55408405|gb|CV720781.1|CV720781
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|87039134|gb|CI193756.1|CI193756
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|325494348|gb|JG458872.1|JG458872
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTCGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88268920|gb|CI377824.1|CI377824
EST:     CGCCTGTATTACTTGCTGGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCAGCTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGA
genomic: CGCCTGTATTACTTGCT-GCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCA-CTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGA
EST: gi|86598372|gb|CI354989.1|CI354989
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|87036007|gb|CI190629.1|CI190629
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88481988|gb|CI419259.1|CI419259
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|88852347|gb|CI374115.1|CI374115
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|86841953|gb|CI338361.1|CI338361
EST:     ACCCCTGTATTACTTGCTGCA-GGGAGCGAGCAGAGCTGGCAACT-AAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|86892250|gb|CI332264.1|CI332264
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|89194989|gb|CI051102.1|CI051102
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|86903196|gb|CI313559.1|CI313559
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGA-GGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|86841267|gb|CI342984.1|CI342984
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|87031846|gb|CI272547.1|CI272547
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGNGAAGA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAG-GAAGA
EST: gi|88381337|gb|CI528317.1|CI528317
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
EST: gi|3763866|gb|AU030605.1|AU030605
EST:     ACGCCTGTATTACTTGCTGCANGGGAGCGAGCAGA-CTGGCAACTGNAAA                         ATATCTTCCACTGACACCAGTCCTTAAGGGTTTTG-GATCCAAAGGA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGA
EST: gi|86873563|gb|CI329941.1|CI329941
EST:     ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAA                         ATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA
genomic: ACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactata ... ctatgtgcagATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGGAAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGGTCAGGCAGGTAGACCCAAGACAATCACTGGATTCCAGACACATTCAACGCCTGTATTACTTGCTGCAGGGGAGCGAGCAGAGCTGGCAACTGAAAAgtaaactataacatctggagtacaatattctaatttgtcagttgatctttgcttatgcttatgcttatgctctttctatgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT