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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGCAAAGAAATTTCACCTGTGGTTATCACTGTTGTTTCTTGCTTGGTGCCTATTTTAAAATCTCCTGAGgtaattgcattttaagttgttctcatcacgtcttttactcgagtgagcatttcagctaaatgcctcgtgtgtcctgacatactattacag

Basic information

species Oryza sativa
transcript LOC_Os04g59494.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g59494.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GRMZM2G376731_T01 (Zea mays), 5'ss of exon 24
ATTGGCAAAGAAATTTCACCTGTGGTTATCACTGTTGTTTCTTGCTTGGTGCCTATTTTAAAATCTCCTGAGgtaattgcattttaagttgttctcatcacgtcttttactcgagtgagcatttcagctaaatgcctcgtgtgtcctgacatactattacag
||||||||||||||  |||||||||| ||||| |||||||| |||||| |  | ||  ||||||| || |||||   || |||||||| | |||| ||  |   ||| | |  |      |||||| ||||||| || || |  ||      ||  | ||||
ATTGGCAAAGAAATAGCACCTGTGGTGATCACCGTTGTTTCGTGCTTGATTACCATCCTAAAATCCCCAGAGgtgggtg-attttaaggt-ttcttatgtcacgtttcatttaaa-----atttcaactaaatggctagttttccccccttcacattgacag

upper sequence: LOC_Os04g59494.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GRMZM5G869572_T01 (Zea mays), 5'ss of exon 4
ATTGGCAAAGAAATTTCACCTGTGGTTATCACTGTTGTTTCTTGCTTGGTGCCTATTTTAAAATCTCCTGAGgtaattgcattttaagttgttctcatcacgtcttttactcgagtgagcatttcagctaaatgcctcgtgtgtcctgacatactattacag
||||||||||||||  | |||||||| ||||| |||||||| |||||||| || ||| ||||||| || ||||| | || ||||| |||   | ||||      | |||    | |||  | ||        | |  | | |  | | ||||    |  |||
ATTGGCAAAGAAATAGCGCCTGTGGTGATCACCGTTGTTTCGTGCTTGGTTCCCATTCTAAAATCCCCAGAGgtgagtg-atttttagt--gtttcatttaagatcttaactaaatgactagttttttcttcttctcccttttccttcacat----tggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58608072|gb|CK036105.1|CK036105
EST:     TGGTTATCACTGTTGTTTCTTGCTTGGTGCCTATTTTAAAATCTCCTGAG                         GGCTTGAATAAGTCACTTCTCGAAAATAGCGCAATCACTCTTGGGAGGCTT
genomic: TGGTTATCACTGTTGTTTCTTGCTTGGTGCCTATTTTAAAATCTCCTGAGgtaattgcat ... actattacagGGCTTGAATAAGTCACTTCTCGAAAATAGCGCAATCACTCTTGGGAGGCTT
EST: gi|58671684|gb|CK060370.1|CK060370
EST:     TGGTTATCACTGTTGTTTCTTGCTTGGTGCCTATTTTAAAATCTCCTGAG                         GGCTTGAATAAGTCACTTCTCGAAAATAGCGCAATCACTCTTGGGAGGCTT
genomic: TGGTTATCACTGTTGTTTCTTGCTTGGTGCCTATTTTAAAATCTCCTGAGgtaattgcat ... actattacagGGCTTGAATAAGTCACTTCTCGAAAATAGCGCAATCACTCTTGGGAGGCTT
EST: gi|86850485|gb|CI307714.1|CI307714
EST:     TGGTTATCACTGTTGTTTCTTGCTTGGTGCCTATTTTAAAATCTCCTGAG                         GGCTTGAATAAGTCACTTCTCGAAAATAGCGCAATCACTCTTGGGAGGCTT
genomic: TGGTTATCACTGTTGTTTCTTGCTTGGTGCCTATTTTAAAATCTCCTGAGgtaattgcat ... actattacagGGCTTGAATAAGTCACTTCTCGAAAATAGCGCAATCACTCTTGGGAGGCTT
EST: gi|58592654|gb|CF990962.1|CF990962
EST:     TGGTTATCACTGTTGTTTCTTGCTTGGTGCCTATTTTAAAATCTCCTGAG                         GGCTTGAATAAGTCACTTCTCGAAAATAGCGCAATCACTCTTGGGAGGCTT
genomic: TGGTTATCACTGTTGTTTCTTGCTTGGTGCCTATTTTAAAATCTCCTGAGgtaattgcat ... actattacagGGCTTGAATAAGTCACTTCTCGAAAATAGCGCAATCACTCTTGGGAGGCTT