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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGgtaagctagctgcttaacaaccttacgtacctttattataaggtaggtaggttacgctgcagtttactatcgcagtgaagtcaaatattaaccttttttt...

Basic information

species Oryza sativa
transcript LOC_Os03g42750.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g42750.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GRMZM2G099056_T01 (Zea mays), 5'ss of exon 24
ATTGACAAGTCAATCGGTGCCATGTATAGGAGGTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGgtaagctagctgcttaac--aaccttacgtacctttattataaggtaggtaggttacgctgcagtttacta--tcgcagtgaagtcaaata-ttaaccttttttt----------
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ATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACCTCCGACGAGTTGTTTCCTTCGCTGTGGGACAAGTGCAAGgttagccactcgaccatcctattattatgaatgtttggttcactattgcccccaggagtcattgcttgagacgttccacttaagctgattgcttaatctgctcaaacacttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29667112|gb|CB663387.1|CB663387
EST:     AGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAG                         AAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATC
genomic: AGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGgtaagctagc ... atgtttgcagAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATC
EST: gi|29656592|gb|CB652867.1|CB652867
EST:     AGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAG                         AAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATC
genomic: AGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGgtaagctagc ... atgtttgcagAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATC
EST: gi|29657699|gb|CB653974.1|CB653974
EST:     AGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAG                         AAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATC
genomic: AGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGgtaagctagc ... atgtttgcagAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATC
EST: gi|29639555|gb|CB644564.1|CB644564
EST:     AGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAG                         AAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATC
genomic: AGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGgtaagctagc ... atgtttgcagAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATC
EST: gi|38477138|gb|CF961271.1|CF961271
EST:     AGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAG                         AAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATC
genomic: AGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGgtaagctagc ... atgtttgcagAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATC
EST: gi|29676302|gb|CB672577.1|CB672577
EST:     AGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAG                         AAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATC
genomic: AGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGgtaagctagc ... atgtttgcagAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATC
EST: gi|29645304|gb|CB650311.1|CB650311
EST:     AGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAG                         AAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATC
genomic: AGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGgtaagctagc ... atgtttgcagAAAGAGTTTTTGGACAAGTACGAGAGCTTCGTTCAGATGGTGACGCGGATC