Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTCAGGCTGGAAGGCCCAAGACAATTACTGGTTTCCAAACACATTCGACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagagctcaattaacaatatgccatttctacaagtttccccatgaaacctaaaacctgatccgttgttttacgttttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g05340.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g05340.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GRMZM5G816609_T01 (Zea mays), 5'ss of exon 10
TTGGTCAGGCTGGAAGGCCCAAGACAATTACTGGTTTCCAAACACATTCGACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagagctcaattaacaatatgccatttctacaagtttccccatgaaacctaaaacctgatccgttgttttacgttttgcag
|||||||||| |||||||| ||||||||||| || || || ||||| || ||||| || |||||||||||||||||  | |||||| ||||||| |||||||||     |||  ||| | |||      | | || | |||   | | ||||  | || |    |  |||  | |  ||| |||||
TTGGTCAGGCAGGAAGGCCTAAGACAATTACCGGCTTTCAGACACACTCCACACCAGTCTTGCTTGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAAgtaa-----gctgcattcagaatgaatggtgtgtatatgtt---caaggaaatgttaatcactgtttgtttgtctgtgttgtgcag

upper sequence: LOC_Os02g05340.1 (Oryza sativa), 5'ss of exon 24
lower sequence: GRMZM2G155384_T03 (Zea mays), 5'ss of exon 23
TTGGTCAGGCTGGAAGGCCCAAGACAATTACTGGTTTCCAAACACATTCGACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagagctcaattaacaatatgc-catttctacaagtttcccc---atgaaacctaaaacctgatccgtt---gttttacgttttgcag
|||||||||| |||||||| |||||||| || || ||||| ||||| || || || || ||||| |||||||||||  | |||||| ||||||| |||||||||  | ||||| ||| | |||  |  | |   |     | ||||    | |||||   || | |  |  ||    || ||| |||  ||||
TTGGTCAGGCAGGAAGGCCGAAGACAATCACCGGCTTCCAGACACACTCCACGCCGGTCTTGCTCGCAGCAGGGGAGAGAGCTGAACTAGCAACTGAAAAgtaaagaaagctccattcagaatgggtgcgtacatgttcctctccctccaaggaaacgctaatcatcgtttgtgttggtgttatgttgcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88234041|gb|CI233890.1|CI233890
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAGAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|38471464|gb|CF955595.1|CF955595
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86437167|gb|CI118889.1|CI118889
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|29671492|gb|CB667767.1|CB667767
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86514224|gb|CI156857.1|CI156857
EST:     TTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: TTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|33796762|gb|CF324249.1|CF324249
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86478402|gb|CI121035.1|CI121035
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|58681607|gb|CK070294.1|CK070294
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88244801|gb|CI242652.1|CI242652
EST:     AACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: AACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|29667415|gb|CB663690.1|CB663690
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86481455|gb|CI124088.1|CI124088
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86841302|gb|CI343008.1|CI343008
EST:     TTGCTTCCACCA-GGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: TTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86260707|gb|CI000155.1|CI000155
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86597729|gb|CI274720.1|CI274720
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|29626310|gb|CB631321.1|CB631321
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86477312|gb|CI119945.1|CI119945
EST:     CACCCGTATTGCTTGCAGCCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTTTGAAGAAGAA
genomic: CACCCGTATTGCTTGCAG-CAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88230883|gb|CI228788.1|CI228788
EST:     TTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: TTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88233504|gb|CI233353.1|CI233353
EST:     ACAGCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86480455|gb|CI123088.1|CI123088
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|87036887|gb|CI191509.1|CI191509
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGCCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|87017868|gb|CI273890.1|CI273890
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88831482|gb|CI083876.1|CI083876
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86513311|gb|CI155944.1|CI155944
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAACTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|87016541|gb|CI273751.1|CI273751
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGATAA                         ATACATCCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86597635|gb|CI274626.1|CI274626
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|58662953|gb|CK051639.1|CK051639
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86827810|gb|CI272986.1|CI272986
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGATAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|87038173|gb|CI192795.1|CI192795
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88263179|gb|CI366953.1|CI366953
EST:     CGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: CGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86521408|gb|CI161614.1|CI161614
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86597111|gb|CI272706.1|CI272706
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86517686|gb|CI157892.1|CI157892
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTTTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88491317|gb|CI428589.1|CI428589
EST:     ACACCCGTATTGCTTGCGGCAGGGGAACGGGCTGAATTAGCAACCGGAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAAAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|89198624|gb|CI016709.1|CI016709
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|87040544|gb|CI195166.1|CI195166
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|87016365|gb|CI271776.1|CI271776
EST:     ACACCCGTATTGCTTGTAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86519852|gb|CI160058.1|CI160058
EST:     ACACCCGTATTGCATGCAGCAGGGGAACAGGCTGAATTAGCAACCGATAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88376329|gb|CI533231.1|CI533231
EST:     AGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: AGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86521895|gb|CI162101.1|CI162101
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88845214|gb|CI084139.1|CI084139
EST:     AGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATAGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: AGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86597731|gb|CI274722.1|CI274722
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86538367|gb|CI178573.1|CI178573
EST:     CCGTATTGCTTGCAGCAGGGGAACGGTCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: CCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88197210|gb|CI197060.1|CI197060
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGGA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86436917|gb|CI118639.1|CI118639
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88232883|gb|CI232127.1|CI232127
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86434590|gb|CI105823.1|CI105823
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|87031843|gb|CI272544.1|CI272544
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88233431|gb|CI233280.1|CI233280
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88837552|gb|CI078912.1|CI078912
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86477406|gb|CI120039.1|CI120039
EST:     CACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: CACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86431082|gb|CI083505.1|CI083505
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86437495|gb|CI119217.1|CI119217
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGGA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88517871|gb|CI444440.1|CI444440
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGANAA                         ATACATTCCCCTTACTTCGGTATTGGAGGGCTTTNTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86517836|gb|CI158042.1|CI158042
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGATAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTTTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86842012|gb|CI338399.1|CI338399
EST:     GTATTGCTTGCACCAGCGGAACGGGCTGAATTACCAACCGAAAA                         ATACATTCCGCTTACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: GTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88852327|gb|CI374095.1|CI374095
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|87039660|gb|CI194282.1|CI194282
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86520198|gb|CI160404.1|CI160404
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86437677|gb|CI119597.1|CI119597
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86514239|gb|CI156872.1|CI156872
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACACTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|87036016|gb|CI190638.1|CI190638
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86479988|gb|CI122621.1|CI122621
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|27577811|gb|CB000506.1|CB000506
EST:     ACACCCGTATTGCCTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|87027501|gb|CI272266.1|CI272266
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|27578146|gb|CB000841.1|CB000841
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88956107|gb|CI092395.1|CI092395
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88233981|gb|CI233830.1|CI233830
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88230405|gb|CI230281.1|CI230281
EST:     TTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: TTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88200804|gb|CI198656.1|CI198656
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTTTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88549057|gb|CI478910.1|CI478910
EST:     TTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: TTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86596990|gb|CI270786.1|CI270786
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86480059|gb|CI122692.1|CI122692
EST:     CCCGTATTGCTTGCAGCCAGGGGAACGGGCTGAATTAGCAACCGTAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: CCCGTATTGCTTGCAG-CAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|87039663|gb|CI194285.1|CI194285
EST:     GGGGAACGGGCTGAATTAGCATCCGGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGA
genomic: GGGGAACGGGCTGAATTAGCAACC-GAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGA
EST: gi|88236013|gb|CI235215.1|CI235215
EST:     GGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: GGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86513365|gb|CI155998.1|CI155998
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86479268|gb|CI121901.1|CI121901
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|66922910|gb|CX109758.1|CX109758
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTC
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTC
EST: gi|88230436|gb|CI230312.1|CI230312
EST:     TTAGCAACCGATTA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: TTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|86437636|gb|CI119358.1|CI119358
EST:     ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
genomic: ACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA
EST: gi|88275490|gb|CI395341.1|CI395341
EST:     ACGGGCTGAATTAGCAACCGAAAA                         ATACATTCCGCTTACTTCGGTATTGGAGGGCTTTGTAATTGTGAAGAAGAA
genomic: ACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 71

TTGGTCAGGCTGGAAGGCCCAAGACAATTACTGGTTTCCAAACACATTCGACACCCGTATTGCTTGCAGCAGGGGAACGGGCTGAATTAGCAACCGAAAAgtaataagag ... cgttttgcagATACATTCCGCTGACTTCGGTATTGGAGGGCTTTGTAATTCTGAAGAAGAACCCGGAATATAACGAGGAGTGAGGGACATTTCCAGGCTTGATACAATGC




<











<


<