1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
GCTTGTGACCATCCTTCGACACAGCGAATCACGTAGAAGGGAAACGGAAAAGCAGCTTAAGCAAAGAGAGCAGGCAGCTGTAACTGCCACTACATCTCCAgtatggtttctatgagctcacagcaattacccctcagtagaaaaaaatgttgaatgatgaaaggattacctaaacatctaaaacaaatatctggtggtga...
species | Oryza sativa |
transcript | LOC_Os09g02650.1 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: AGCAGCTTAAGCAAAGAGAGCAGGCAGCTGTAACTGCCACTACATCTCCA GGGAAACGGAAATGGTTCAGTGAAGCACTCTGCTGATGACTCCA-CACACCEST: gi|58695891|gb|CK084578.1|CK084578
genomic: AGCAGCTTAAGCAAAGAGAGCAGGCAGCTGTAACTGCCACTACATCTCCAgtatggtttc ... catcttacagGG-AAACGGAAATGGTTCAGTGAAGCACTCTGCTGATGACTCCAACACACC
EST: AGCAGCTTAAGCAAAGAGAGCAGGCAGCTGTAACTGCCACTACATCTCCA GGAAACGGAAATGGTTCAGTGAAGCACTCTGCTGATGACTCCAACACACCA
genomic: AGCAGCTTAAGCAAAGAGAGCAGGCAGCTGTAACTGCCACTACATCTCCAgtatggtttc ... catcttacagGGAAACGGAAATGGTTCAGTGAAGCACTCTGCTGATGACTCCAACACACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGTGACCATCCTTCGACACAGCGAATCACGTAGAAGGGAAACGGAAAAGCAGCTTAAGCAAAGAGAGCAGGCAGCTGTAACTGCCACTACATCTCCAgtatggtttctatgagctcacagcaattacccctcagtagaaaaaaatgttgaatgatgaaaggattacctaaacatctaaaacaaatatctggtggtga
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa