1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
CTCGGGTAGCCAGGGTCAGAAATTGGATTCTGTTCTGGCTAAACCCCTTAAGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGgtattttccaagatgatgcaagtcagatcatgcttctttttccatgtatttcataaaaatccctttttgtag
species | Oryza sativa |
transcript | LOC_Os08g34970.1 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: TTGCGGAGGCTGGTTCAAAAG GTCGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGTEST: gi|33687148|gb|CF315387.1|CF315387
genomic: TTGCGGA-GCTGGTTCAAAAGgtattttcca ... ctttttgtagGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGG
EST: AGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAG GTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGEST: gi|87017918|gb|CI273940.1|CI273940
genomic: AGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGgtattttcca ... ctttttgtagGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGG
EST: AGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAG GTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGEST: gi|25806151|gb|CA762112.1|CA762112
genomic: AGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGgtattttcca ... ctttttgtagGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGG
EST: AGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAG GTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGEST: gi|29642984|gb|CB647991.1|CB647991
genomic: AGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGgtattttcca ... ctttttgtagGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGG
EST: AGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAG GTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGEST: gi|88521654|gb|CI449362.1|CI449362
genomic: AGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGgtattttcca ... ctttttgtagGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGG
EST: GCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAG GTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGEST: gi|88260378|gb|CI362671.1|CI362671
genomic: GCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGgtattttcca ... ctttttgtagGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGG
EST: AGACTCAAGCATTTGCTTCTCCTGATAAGGTTTCGGAGCTGGTTCAAAAG GTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGEST: gi|58657979|gb|CK046659.1|CK046659
genomic: AGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGgtattttcca ... ctttttgtagGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGG
EST: AGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAG GTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGEST: gi|86853006|gb|CI324708.1|CI324708
genomic: AGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGgtattttcca ... ctttttgtagGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGG
EST: GACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGGCTGGTTCAAAAG GGTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGEST: gi|33687147|gb|CF315386.1|CF315386
genomic: GACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGA-GCTGGTTCAAAAGgtattttcca ... ctttttgtagGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGG
EST: GATAAGGTTGCGGAGCTGGTTCAAAAG GTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGGEST: gi|86481593|gb|CI124226.1|CI124226
genomic: GATAAGGTTGCGGAGCTGGTTCAAAAGgtattttcca ... ctttttgtagGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGG
EST: AGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAG GTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGG
genomic: AGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGgtattttcca ... ctttttgtagGTTGGGACTGCTATTCAGCAAGATTTACCCAAAGTAATGACCATGATGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGGGTAGCCAGGGTCAGAAATTGGATTCTGTTCTGGCTAAACCCCTTAAGACTCAAGCATTTGCTTCTCCTGATAAGGTTGCGGAGCTGGTTCAAAAGgtattttccaagatgatgcaagtcagatcatgcttctttttccatgtatttcataaaaatccctttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT