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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccactaactgcttacatgctacccctattcgtaccttccatctttcttacccatttctccatctgcag

Basic information

species Oryza sativa
transcript LOC_Os08g22864.2
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g22864.2 (Oryza sativa), 5'ss of exon 23
lower sequence: GRMZM2G327394_T01 (Zea mays), 5'ss of exon 24
GCTCTGGCAGCCATACCCTCAATTGACAGTGAAGCCGTCCAACAGAGAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccactaactgcttaca-tgctacccctattcgtaccttccatctttcttac-ccatttctccatctgcag
||||| ||||||||||| ||||| || |||||||| ||||||||| || | ||||| ||||| || ||||| ||  | || ||||||||||| |||||  |   |     | |||   |   |  || | || | |  |   | ||  |||| | | | ||   | |||||
GCTCTTGCAGCCATACCTTCAATAGATAGTGAAGCAGTCCAACAGCGATTGGATCGCGTTCGAACGTTCTATGAGTTGTTAAATTTGCCTTTTGAGgtacatgtcacttagtttatggtaacaatccaagtctttcgatgttttttatttacactactgctatgtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86853148|gb|CI324850.1|CI324850
EST:     GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|86437704|gb|CI119624.1|CI119624
EST:     GAATAGATCGTGTCCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|88382101|gb|CI533305.1|CI533305
EST:     GAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: GAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|86603014|gb|CI357378.1|CI357378
EST:     ACGAACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: ACGAACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|86480174|gb|CI122807.1|CI122807
EST:     GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|88269996|gb|CI381294.1|CI381294
EST:     GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|86480164|gb|CI122797.1|CI122797
EST:     GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|58586846|gb|CF985154.1|CF985154
EST:     GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|29624113|gb|CB629124.1|CB629124
EST:     GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|29626007|gb|CB631018.1|CB631018
EST:     GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|88253653|gb|CI352279.1|CI352279
EST:     AACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: AACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|86437028|gb|CI118750.1|CI118750
EST:     GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|88670678|gb|CI724794.1|CI724794
EST:     GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|88671305|gb|CI724351.1|CI724351
EST:     GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATNTATTTCCTGCAAAAGA
genomic: GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|58692351|gb|CK081038.1|CK081038
EST:     GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
EST: gi|88996514|gb|CI260018.1|CI260018
EST:     GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAG                         TCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA
genomic: GAATAGATCGTGTTCGGACATTCTACGAACTCTTGAATTTGCCTTTCGAGgtttaccact ... ccatctgcagTCTTTGCTTGGATTTATTGCAGAACATGAATATTTATTTTCTGCAAAAGA