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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGCTAATGAAAATGGAGGTGAAACAACCTTCAGCTATGATCGGCTGATATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttattttccttgcaaccttggaagcaaagtaggtgttatgtgttgtttctgctaccttgtgaaatggataagcacttaccttacccataaatatg...

Basic information

species Oryza sativa
transcript LOC_Os03g24220.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g24220.1 (Oryza sativa), 5'ss of exon 23
lower sequence: GRMZM2G081322_T01 (Zea mays), 5'ss of exon 23
GACTGCTAATGAAAATGGAGGTGAAACAACCTTCAGCTATGATCGGCTGATATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttattttccttgcaaccttggaagcaaagtaggtgttatgtgttgtttctgctacct--------tgtgaaatggataagcacttaccttacccataaatatg
 || ||||| |||||||||||  | |||||||| |||||||| ||  |||||||||| || ||  |||||||| |||||||| |  |||| ||||||||||||||| | |  |  |||| | |||  |  |          | | | |   | ||| |||||        ||||||| || | || | ||  |  |   | |      
AACAGCTAAAGAAAATGGAGGCCAGACAACCTTTAGCTATGAACGATTGATATCAAAGTCCACTGACCCTGTTAGTGGGATAAACAACAAGCGCAGAGAGgtttgtgactc-cactgca-cattgataaaagctctctctctctctctctctcctgttacctcatttgcttgtgaaagggctgagtatttgtcgaaattaga------

upper sequence: LOC_Os03g24220.1 (Oryza sativa), 5'ss of exon 23
lower sequence: GRMZM2G359566_T01 (Zea mays), 5'ss of exon 8
GACTGCTAATGAAAATGGAGGTGAAACAACCTTCAGCTATGATCGGCTGATATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttattttccttgcaaccttggaagcaaag-taggtgttatgtgttgtttctgctaccttgtgaaatggataagca-cttaccttacccataaatatg
 |||||||| ||||| |||||  | || ||||| ||||| || ||  || ||||||| |||||  |||||||  ||||||||||  |||| ||||||||||||||| |||  |  |||  |||||  |  |    |   | |    | ||   ||   | | |||||  | || | ||    ||  | ||   | | || | 
AACTGCTAACGAAAACGGAGGCCAGACCACCTTTAGCTACGACCGCTTGGTATCAAAGTCTACTGACCCTGTCAGTGGGATAGACCACAAGCGCAGAGAGgtttgtgattcccactgcttccttgagaaaagctctctatctctcctattacctc-atttcgttgtgtgagggctgagtggtttgtcgtaattacacatgt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86479401|gb|CI122034.1|CI122034
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|29669713|gb|CB665988.1|CB665988
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|16754192|gb|BM038571.1|BM038571
EST:     TCTACCAACCCTGTTCGTGGGATAGATTCCCAACCCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|86479378|gb|CI122011.1|CI122011
EST:     TATCGAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|87022895|gb|CI269831.1|CI269831
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|89193062|gb|CI050360.1|CI050360
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|33794451|gb|CF323110.1|CF323110
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCC
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCC
EST: gi|86597638|gb|CI274629.1|CI274629
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|86437319|gb|CI119041.1|CI119041
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|218505177|gb|FG951529.1|FG951529
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|86502671|gb|CI145304.1|CI145304
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|38479352|gb|CF963481.1|CF963481
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|163923599|gb|EG713316.1|EG713316
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|86480869|gb|CI123502.1|CI123502
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTTGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|58667525|gb|CK056211.1|CK056211
EST:     AGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATGACGAAGGAA
genomic: AGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|9864985|gb|AU100735.1|AU100735
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTAC-AACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|86252596|gb|CI003932.1|CI003932
EST:     TTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|38480301|gb|CF964390.1|CF964390
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|86480878|gb|CI123511.1|CI123511
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|88260846|gb|CI361434.1|CI361434
EST:     CAACCCTGTTCCTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: CAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
EST: gi|29674448|gb|CB670723.1|CB670723
EST:     TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAG                         ACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA
genomic: TATCAAAATCTACCAACCCTGTTCGTGGGATAGATTACAAACGCAGAGAGgtttgttatt ... gcttctgcagACATATTTGTCGGACAGCGAATTCCAGACTGTATTTGGTATAACGAAGGAA