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21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
CACACGTGTTCAGTTCCATCAGGATCAATTGCACTTTCTTGTTGTGCATGAGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctctcttcacgtgcagttcaagttaactacaaaggctatttcattactcaccttaactttactttcag
species | Oryza sativa |
transcript | LOC_Os03g14980.2 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGCEST: gi|27554431|gb|CA998331.1|CA998331
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGC
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGCEST: gi|29672341|gb|CB668616.1|CB668616
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGC
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGCEST: gi|58677432|gb|CK066119.1|CK066119
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGC
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGTGAGAACTCTTCTCCAATAACGEST: gi|58594272|gb|CF992580.1|CF992580
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACG
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGTGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTEST: gi|29680681|gb|CB676956.1|CB676956
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCT
EST: AACCCGTGAAGCAG TGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGCEST: gi|163926688|gb|EG713704.1|EG713704
genomic: AACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGC
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGTGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGCEST: gi|58694029|gb|CK082716.1|CK082716
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGC
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGTGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGCEST: gi|218501279|gb|FG957977.1|FG957977
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGC
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGTGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGCEST: gi|218487225|gb|FG954419.1|FG954419
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGC
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGTGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGCEST: gi|29680680|gb|CB676955.1|CB676955
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGC
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGCEST: gi|29666551|gb|CB662826.1|CB662826
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGC
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGCEST: gi|29673861|gb|CB670136.1|CB670136
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGC
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGCEST: gi|58590233|gb|CF988541.1|CF988541
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGC
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGTGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGCEST: gi|325493903|gb|JG458427.1|JG458427
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGC
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGTGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGCEST: gi|29628403|gb|CB633414.1|CB633414
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGC
EST: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAG TGGCCTGTCCGTGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCGGC
genomic: AGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctc ... ttactttcagTGGCCTGTCCGGGAGAACTCTTCTCCAATAACGCATGCCATGTTCTCCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACACGTGTTCAGTTCCATCAGGATCAATTGCACTTTCTTGTTGTGCATGAGACCCAGATTGCCATATATGAAACTACAAAATTAGAACCCGTGAAGCAGgtaaattctctcttcacgtgcagttcaagttaactacaaaggctatttcattactcaccttaactttactttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC