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21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
GGCTAGGAGATGTGATACCCTTATCCGTCTAGTTGAGAAAGAGAATCAGGAATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAGgtacctctgttcatttcaccttccaagatctttatttcattgtttgaggctttatgcactactttgtgtactgttttgtgtagtactttcttcgtttcac...
species | Oryza sativa |
transcript | LOC_Os01g27040.1 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: AATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACCAAAGGATGGCTAAG AACATGACACCGACGAAGCGATCTGCGTTAAGGGTTTCAGAAGGTGAAACTEST: gi|58680214|gb|CK068901.1|CK068901
genomic: AATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAGgtacctctgt ... tctgttgcagAACATGACACCGACAAAGCGATCTGCGTTAAGGGTTTCAGAAGGTGAAACT
EST: AATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAG AACATGACACCGACAAAGCGATCTGCGTTAAGGGTTTCAGAAGGTGAAACTEST: gi|58665521|gb|CK054207.1|CK054207
genomic: AATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAGgtacctctgt ... tctgttgcagAACATGACACCGACAAAGCGATCTGCGTTAAGGGTTTCAGAAGGTGAAACT
EST: AATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAG AACATGACACCGACAAAGCGATCTGCGTTAAGGGTTTCAGAAGGTGAAACTEST: gi|86429736|gb|CI082159.1|CI082159
genomic: AATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAGgtacctctgt ... tctgttgcagAACATGACACCGACAAAGCGATCTGCGTTAAGGGTTTCAGAAGGTGAAACT
EST: AATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAG AACATGACACCGACAAAGCGATCTGCGTTAAGGGTTTCAGAAGGTGAAACTEST: gi|396941444|gb|HO188653.1|HO188653
genomic: AATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAGgtacctctgt ... tctgttgcagAACATGACACCGACAAAGCGATCTGCGTTAAGGGTTTCAGAAGGTGAAACT
EST: AATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAG AACATGACACCGACAAAGCGATCTGCGTTAAGGGTTTCAGAAGGTGAAACTEST: gi|88841878|gb|CI081134.1|CI081134
genomic: AATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAGgtacctctgt ... tctgttgcagAACATGACACCGACAAAGCGATCTGCGTTAAGGGTTTCAGAAGGTGAAACT
EST: AATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAG AACATGACACCGACTAAGCGATCTGCGTTAAGGGTTTCAGAAGGTGAAACT
genomic: AATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAGgtacctctgt ... tctgttgcagAACATGACACCGACAAAGCGATCTGCGTTAAGGGTTTCAGAAGGTGAAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTAGGAGATGTGATACCCTTATCCGTCTAGTTGAGAAAGAGAATCAGGAATATGATGAGCAAGAAAGGCAGGCAAGGAAGGACAAAAGGATGGCTAAGgtacctctgttcatttcaccttccaagatctttatttcattgtttgaggctttatgcactactttgtgtactgttttgtgtagtactttcttcgtttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccttcc