1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
TACTTGGGTCCAGTTTAACTCTGACTGGAGTCGTTTGTTAGTAGTACATGAGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGgtagctatatatgctgtatcaaaaatggatagaattcctatgttcataattgatcaaataattttgttctggtttgctaaaatctcttttttatctctcttgtttcag
species | Oryza sativa |
transcript | LOC_Os01g15020.1 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: CTCAGCTAGCTATATATGATGCATCGAAAATGGAAAGAATCTACCAG TGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCAEST: gi|87020791|gb|CI269508.1|CI269508
genomic: CTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGgtagctatat ... cttgtttcagTGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCA
EST: TATATATGATGCATCAAAAATGGAAAGAATCTACCAG TGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCAEST: gi|29630394|gb|CB635403.1|CB635403
genomic: TATATATGATGCATCAAAAATGGAAAGAATCTACCAGgtagctatat ... cttgtttcagTGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCA
EST: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTCCCAG TGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCAEST: gi|86860682|gb|CI324949.1|CI324949
genomic: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGgtagctatat ... cttgtttcagTGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCA
EST: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAG TGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCAEST: gi|58680385|gb|CK069072.1|CK069072
genomic: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGgtagctatat ... cttgtttcagTGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCA
EST: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAG TGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCAEST: gi|86477786|gb|CI120419.1|CI120419
genomic: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGgtagctatat ... cttgtttcagTGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCA
EST: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAG TGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCAEST: gi|33795487|gb|CF323613.1|CF323613
genomic: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGgtagctatat ... cttgtttcagTGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCA
EST: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAG TGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCAEST: gi|88828342|gb|CI000451.1|CI000451
genomic: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGgtagctatat ... cttgtttcagTGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCA
EST: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAG TGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCAEST: gi|24208900|gb|AU225927.1|AU225927
genomic: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGgtagctatat ... cttgtttcagTGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCA
EST: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAG TGGATACCTCAGGACGCTTEST: gi|29626132|gb|CB631143.1|CB631143
genomic: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGgtagctatat ... cttgtttcagTGGATACCTCAGGACGCTT
EST: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAG TGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCAEST: gi|86482317|gb|CI124950.1|CI124950
genomic: AGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGgtagctatat ... cttgtttcagTGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCA
EST: TCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAG TGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCAEST: gi|29630453|gb|CB635462.1|CB635462
genomic: TCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGgtagctatat ... cttgtttcagTGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCA
EST: GCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAG TGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCA
genomic: GCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGgtagctatat ... cttgtttcagTGGATACCTCAGGACGCTTTGTCAGCTCCCATTTCACATGCATCATACTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTTGGGTCCAGTTTAACTCTGACTGGAGTCGTTTGTTAGTAGTACATGAGACTCAGCTAGCTATATATGATGCATCAAAAATGGAAAGAATCTACCAGgtagctatatatgctgtatcaaaaatggatagaattcctatgttcataattgatcaaataattttgttctggtttgctaaaatctcttttttatctctcttgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA