1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GGAGGATAAAACCAAGGGCAATGCTGCAGGAGCGTTGAGTAACCTAGTGAGGAACTCTAACATACTCTGTGAAGATATTGTCTCCCAGGGCGCAATTCAGgtttgccaactgttgcttactgctcatgctcatgcatcttattctcaatacaggtccacaatttttatcgttgttaagttgtacagcaagggaaacgact...
species | Oryza sativa |
transcript | LOC_Os12g24550.1 |
intron # | 22 |
splice site | 5' |
intron type | U2 |
EST: CTCCCAGGGCGCAATTCAG GCCCTGCTGAAGATGGTCAGTAGCTACTCCACCGTGGCTCTGAGCCCCAGCEST: gi|25806111|gb|CA762072.1|CA762072
genomic: CTCCCAGGGCGCAATTCAGgtttgccaac ... tgctatgcagGCCCTGCTGAAGATGGTCAGTAGCTACTCCACCGTGGCTCTGAGCCCCAGC
EST: GGAACTCTAACATACTCTGTGAAGATATTGTCTCCCAGGGCGCAATTCAG GCCCTGCTGAAGATGGTCAGTAGCTACTCCACCGTGGCTTTGAGCCCCAGCEST: gi|88319421|gb|CI515882.1|CI515882
genomic: GGAACTCTAACATACTCTGTGAAGATATTGTCTCCCAGGGCGCAATTCAGgtttgccaac ... tgctatgcagGCCCTGCTGAAGATGGTCAGTAGCTACTCCACCGTGGCTCTGAGCCCCAGC
EST: GGGCGCAATTCAG GCCCTGCTGAAGATGGTCAGTAGCTACTCCACCGTGGCTCTGAGCCCCAGCEST: gi|58677169|gb|CK065856.1|CK065856
genomic: GGGCGCAATTCAGgtttgccaac ... tgctatgcagGCCCTGCTGAAGATGGTCAGTAGCTACTCCACCGTGGCTCTGAGCCCCAGC
EST: GGAACTCTAACATACTCTGTGAAGATATTGTCTCCCAGGGCGCAATTCAG GCCCTGCTGAAGATGGTCAGTAGCTACTCCACCGTGGCTCTGAGCCCCAGCEST: gi|88304273|gb|CI515546.1|CI515546
genomic: GGAACTCTAACATACTCTGTGAAGATATTGTCTCCCAGGGCGCAATTCAGgtttgccaac ... tgctatgcagGCCCTGCTGAAGATGGTCAGTAGCTACTCCACCGTGGCTCTGAGCCCCAGC
EST: ATACTCTNTGAAGATATTTTCTCCCAGGGCGCAATTCAG GCCCTGCTGAAGATGGTCAGTAGCTACTCCAGCCGTGGCTGTGAGCCCCAGEST: gi|88319424|gb|CI515885.1|CI515885
genomic: ATACTCTGTGAAGATATTGTCTCCCAGGGCGCAATTCAGgtttgccaac ... tgctatgcagGCCCTGCTGAAGATGGTCAGTAGCTACTCCA-CCGTGGCTCTGAGCCCCAG
EST: TCCCAGGGCGCAATTCAG GCCCTGCTGAAGATGGTCAGTAGCTACTCCACCGTGGCTCTGAGCCCCAGCEST: gi|88288245|gb|CI515389.1|CI515389
genomic: TCCCAGGGCGCAATTCAGgtttgccaac ... tgctatgcagGCCCTGCTGAAGATGGTCAGTAGCTACTCCACCGTGGCTCTGAGCCCCAGC
EST: TATTGTCTCCCAGGGCGCAATTCAG GCCCTGCTGAAGATGGTCAGTAGCTACTCCACCGTGGCTCTGAGCCCCAGC
genomic: TATTGTCTCCCAGGGCGCAATTCAGgtttgccaac ... tgctatgcagGCCCTGCTGAAGATGGTCAGTAGCTACTCCACCGTGGCTCTGAGCCCCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGATAAAACCAAGGGCAATGCTGCAGGAGCGTTGAGTAACCTAGTGAGGAACTCTAACATACTCTGTGAAGATATTGTCTCCCAGGGCGCAATTCAGgtttgccaactgttgcttactgctcatgctcatgcatcttattctcaatacaggtccacaatttttatcgttgttaagttgtacagcaagggaaacgact
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