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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCCAAAAGAAAATTTCTATGGATCTCCAACTGAAACATGATAGAATTTCAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAGgtaactatcttttctaataccatataattttactttttgccttcacagtatataaacactttaattcattgattttatag

Basic information

species Oryza sativa
transcript LOC_Os07g23990.2
intron # 22
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643506|gb|CB648513.1|CB648513
EST:     CAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAG                         GTTTTGGTGTTTAGCACATACGACATTCCTCCATCCGACATTTTGAAAGGT
genomic: CAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAGgtaactatct ... gattttatagGTTTTGGTGTTTAGCACATACGACATTCCTCCATCCGACATTCTGAAAGGT
EST: gi|29625530|gb|CB630541.1|CB630541
EST:     CAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAG                         GTTTTGGTGTTTTGCACATACGACATTCCTCCATCCGACATTCTGAAAGGT
genomic: CAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAGgtaactatct ... gattttatagGTTTTGGTGTTTAGCACATACGACATTCCTCCATCCGACATTCTGAAAGGT
EST: gi|88460142|gb|CI695345.1|CI695345
EST:     CAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAG                         GTTTTGGTGTTTAGCACATACGACATTCCTCCATCCGACATTCTGAAAGGT
genomic: CAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAGgtaactatct ... gattttatagGTTTTGGTGTTTAGCACATACGACATTCCTCCATCCGACATTCTGAAAGGT
EST: gi|29675753|gb|CB672028.1|CB672028
EST:     CAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAG                         GTTTTGGTGTTTAGCACATACGACATTCCTCCATCCGACATTTTGAAAGGT
genomic: CAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAGgtaactatct ... gattttatagGTTTTGGTGTTTAGCACATACGACATTCCTCCATCCGACATTCTGAAAGGT
EST: gi|29641707|gb|CB646714.1|CB646714
EST:     CAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAG                         GTTTTGGTGTTTAGCACATACGACATTCCTCCATCCGACATTCTGAAAGGT
genomic: CAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAGgtaactatct ... gattttatagGTTTTGGTGTTTAGCACATACGACATTCCTCCATCCGACATTCTGAAAGGT
EST: gi|9866032|gb|AU101782.1|AU101782
EST:     CAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAG                         GTTTTGGTGTTTAGCACATACGACATTCCTCCATCCGACATTCTGAAAGGT
genomic: CAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAGgtaactatct ... gattttatagGTTTTGGTGTTTAGCACATACGACATTCCTCCATCCGACATTCTGAAAGGT
EST: gi|88344438|gb|CI677487.1|CI677487
EST:     CAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAG                         GTTTTGGTGTTTAGCACATACGACATTCCTCCATCCGACATTCTGAAAGGT
genomic: CAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAGgtaactatct ... gattttatagGTTTTGGTGTTTAGCACATACGACATTCCTCCATCCGACATTCTGAAAGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACCCAAAAGAAAATTTCTATGGATCTCCAACTGAAACATGATAGAATTTCAATTGTCTGAGCTTTTCGAAAGCAGAGCCTTGTGTCTTCAGTGTTTCAGgtaactatcttttctaataccatataattttactttttgccttcacagtatataaacactttaattcattgattttatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT