1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
TGATGTTTTTGCATTCGGGGTGGTCGCGCTCGAGACTGTTGCTGGTCGGTCAAACATCGACAACTCCCTTGAGGAAAGCAAGGTTAATCTCTTTGGATGGgtaagttgatcaatgatccttttgcaacctagaatgaaccaattcattcatgtccataaccttctgattactaaaactatgctcatttcaag
species | Oryza sativa |
transcript | LOC_Os05g16824.3 |
intron # | 22 |
splice site | 5' |
intron type | U2 |
EST: CAAACATCG-C-ACTCCCTTGAGGAAAGCAAGGTTAATCTCTTTGGATGG GCATGGAGCCTGTATGAAAAGGAGCAAGCTCTAGAAATCGTTGACCCAAGAEST: gi|86505023|gb|CI147656.1|CI147656
genomic: CAAACATCGACAACTCCCTTGAGGAAAGCAAGGTTAATCTCTTTGGATGGgtaagttgat ... tcatttcaagGCATGGAGCCTGTATGAAAAGGAGCAAGCTCTAGAAATCGTTGACCCAAGA
EST: ACATCGACAACTCCCTTGAGGAAAGCAAGGTTAATCTCTTTGGATGG GCATGGAGCCTGTATGAAAAGGAGCAAGCTCTAGAAATCGTTGACCCAAGAEST: gi|88249929|gb|CI249778.1|CI249778
genomic: ACATCGACAACTCCCTTGAGGAAAGCAAGGTTAATCTCTTTGGATGGgtaagttgat ... tcatttcaagGCATGGAGCCTGTATGAAAAGGAGCAAGCTCTAGAAATCGTTGACCCAAGA
EST: CAAACATCGACAACTCCCTTGAGGAAAGCAAGGTTAATCTCTTTGGATGG GCATGGAGCCTGTATGAAAAGGAGCAAGCTCTAGAAATCGTTGACCCAAGAEST: gi|2317612|gb|C22666.1|C22666
genomic: CAAACATCGACAACTCCCTTGAGGAAAGCAAGGTTAATCTCTTTGGATGGgtaagttgat ... tcatttcaagGCATGGAGCCTGTATGAAAAGGAGCAAGCTCTAGAAATCGTTGACCCAAGA
EST: CAAACATCGACAACTCCCTTGAGGAAANCAAGGTTAATCTCTTTGGATGG GCATGGANCCTGTATGAAAAGGAGCAAGCTCTAGAAATCGTTGNCCCAAGAEST: gi|29627081|gb|CB632092.1|CB632092
genomic: CAAACATCGACAACTCCCTTGAGGAAAGCAAGGTTAATCTCTTTGGATGGgtaagttgat ... tcatttcaagGCATGGAGCCTGTATGAAAAGGAGCAAGCTCTAGAAATCGTTGACCCAAGA
EST: CAAACATCGACAACTCCCTTGAGGAAAGCAAGGTTAATCTCTTTGGATGG GCATGGAGCCTGTATGAAAAGGAGCAAGCTCTAGAAATCGTTGACCCAAGA
genomic: CAAACATCGACAACTCCCTTGAGGAAAGCAAGGTTAATCTCTTTGGATGGgtaagttgat ... tcatttcaagGCATGGAGCCTGTATGAAAAGGAGCAAGCTCTAGAAATCGTTGACCCAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGTTTTTGCATTCGGGGTGGTCGCGCTCGAGACTGTTGCTGGTCGGTCAAACATCGACAACTCCCTTGAGGAAAGCAAGGTTAATCTCTTTGGATGGgtaagttgatcaatgatccttttgcaacctagaatgaaccaattcattcatgtccataaccttctgattactaaaactatgctcatttcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG