1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
GAAAAAGCTAGACCGCTATAAGAACCCTTGGTTAGAGTTGAAAATTCAGTATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATGgtatgctacaccacaattgttcctgaacaatttaagcccctttcttttttgcattttaacagcttgtgtctattacag
species | Oryza sativa |
transcript | LOC_Os05g05780.1 |
intron # | 22 |
splice site | 5' |
intron type | U2 |
EST: ATGGCCAGAATAAAGGGAAG-T-TACAACGAAGAATGTGATCGTTTTATG TTATGCATGGTGCACAAACTCGGATACGGAAACTGGGATGAACTGAAAGCAEST: gi|29632572|gb|CB637581.1|CB637581
genomic: ATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATGgtatgctaca ... tctattacagTTATGCATGGTGCACAAACTCGGATACGGAAACTGGGATGAACTGAAAGCA
EST: ATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATG TTATGCATGGTGCACAAACTCGGATACGGAAACTGGGATGAACTGAAAGCAEST: gi|218488523|gb|FG953156.1|FG953156
genomic: ATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATGgtatgctaca ... tctattacagTTATGCATGGTGCACAAACTCGGATACGGAAACTGGGATGAACTGAAAGCA
EST: ATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATG TTATGCATGGTGCACAAACTCGGATACGGAAACTGGGATGAACTGAAAGCAEST: gi|58599180|gb|CK009708.1|CK009708
genomic: ATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATGgtatgctaca ... tctattacagTTATGCATGGTGCACAAACTCGGATACGGAAACTGGGATGAACTGAAAGCA
EST: ATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATG TTATGCATGGTGCACAAACTCGGATACGGAAACTGGGATGAACTGAAAGCAEST: gi|27577440|gb|CB000135.1|CB000135
genomic: ATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATGgtatgctaca ... tctattacagTTATGCATGGTGCACAAACTCGGATACGGAAACTGGGATGAACTGAAAGCA
EST: ATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATG TTATGCATGGTGCACAAACTCGGATACGGAAACTGGGATGAACTGAAAGCAEST: gi|86831000|gb|CI295496.1|CI295496
genomic: ATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATGgtatgctaca ... tctattacagTTATGCATGGTGCACAAACTCGGATACGGAAACTGGGATGAACTGAAAGCA
EST: ATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATG TTATGCATGGTGCACAAACTCGGATACGGAAACTGGGATGAACTGAAAGCA
genomic: ATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATGgtatgctaca ... tctattacagTTATGCATGGTGCACAAACTCGGATACGGAAACTGGGATGAACTGAAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAAAGCTAGACCGCTATAAGAACCCTTGGTTAGAGTTGAAAATTCAGTATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATGgtatgctacaccacaattgttcctgaacaatttaagcccctttcttttttgcattttaacagcttgtgtctattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA