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CAATTCGAGAGGCTGTTTCAGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGgtgagctgatactatgttttagtgttctactattccatggactatgatttcgaatcctaattagtaatgttgaactgggctgttacatgaaaactggcat...
species | Oryza sativa |
transcript | LOC_Os03g42750.1 |
intron # | 22 |
splice site | 5' |
intron type | U2 |
EST: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAG ATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAAEST: gi|29656592|gb|CB652867.1|CB652867
genomic: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGgtgagctgat ... ttaaattcagATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAA
EST: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAG ATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAAEST: gi|29657699|gb|CB653974.1|CB653974
genomic: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGgtgagctgat ... ttaaattcagATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAA
EST: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAG ATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAAEST: gi|58680504|gb|CK069191.1|CK069191
genomic: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGgtgagctgat ... ttaaattcagATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAA
EST: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAG ATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAAEST: gi|29639555|gb|CB644564.1|CB644564
genomic: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGgtgagctgat ... ttaaattcagATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAA
EST: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAG ATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAAEST: gi|38477138|gb|CF961271.1|CF961271
genomic: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGgtgagctgat ... ttaaattcagATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAA
EST: AGTTTTCTCGAAAAGTCGATGGGTTGACATACACCATAGCTGCTGAAGAG ATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAAEST: gi|29676302|gb|CB672577.1|CB672577
genomic: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGgtgagctgat ... ttaaattcagATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAA
EST: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAG ATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAAEST: gi|29645304|gb|CB650311.1|CB650311
genomic: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGgtgagctgat ... ttaaattcagATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAA
EST: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAG ATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAAEST: gi|29627167|gb|CB632178.1|CB632178
genomic: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGgtgagctgat ... ttaaattcagATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAA
EST: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAG ATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAA
genomic: AGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGgtgagctgat ... ttaaattcagATTCCTTTCCAGCTAGGGCTGTCAAAAACTGATCTAAGGAGGGTGATCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATTCGAGAGGCTGTTTCAGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGgtgagctgatactatgttttagtgttctactattccatggactatgatttcgaatcctaattagtaatgttgaactgggctgttacatgaaaactggcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA