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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAATGAAAGAGCACAAAAATCCAAAGGTGCTTAGCGAGGGTATTCTTTGGATGGTTTCTGCCGTTGAGGACTTTGGGATCTCCAATTTAAAGCTAAAGgtttgcttagcttttcctggttgtgctatacttacaatgtcactggacactcgttcttagtagccttcttgttccag

Basic information

species Oryza sativa
transcript LOC_Os01g60040.2
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g60040.2 (Oryza sativa), 5'ss of exon 22
lower sequence: GRMZM2G009849_T01 (Zea mays), 5'ss of exon 4
AATAATGAAAGAGCACAAAAATCCAAAGGTGCTTAGCGAGGGTATTCTTTGGATGGTTTCTGCCGTTGAGGACTTTGGGATCTCCAATTTAAAGCTAAAGgtttgcttagcttttcctggttgtgctatacttac----aatgtcactggacactcgttcttagtagccttcttgttccag-------------------
||||||||| |||||||| ||||| ||||| ||||| || ||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||  ||||  || | | || |||  ||||||||||    |       ||    | |  |    | || |        |  |                   
AATAATGAAGGAGCACAAGAATCCCAAGGTTCTTAGTGATGGTATTCTTTGGATGGTCTCTGCTGTGGAAGACTTTGGGATCTCCAATTTAAAGCTAAAGgtgcgctttcctatgcttgtttgctctatacttactgttagcagtcttgactgcgccatgcaggcagtccctacaggctggcgccatctctgtccctatc

upper sequence: LOC_Os01g60040.2 (Oryza sativa), 5'ss of exon 22
lower sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 22
AATAATGAAAGAGCACAAAAATCCAAAGGTGCTTAGCGAGGGTATTCTTTGGATGGTTTCTGCCGTTGAGGACTTTGGGATCTCCAATTTAAAGCTAAAGgtttgcttagcttttcctggttgtgctatacttacaatgtcactggacactcgttcttagtagccttc-ttgttccag
||||||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||   |||  || | | || |||  ||||||||||  ||| |    ||||| ||||||    | |||  |||||||||
AATAATGAAGGAGCACAAGAATCCCAAGGTTCTTAGTGAGGGTATTCTTTGGATGGTCTCTGCTGTGGAAGACTTTGGGATCTCCAATTTAAAGCTAAAGgtgcacttttctatgcttgtttgctctatacttactgtgttatcacacacttgttcttttctgtctttgttgttccag

upper sequence: LOC_Os01g60040.2 (Oryza sativa), 5'ss of exon 22
lower sequence: GLYMA10G35140.1 (Glycine max), 5'ss of exon 24
AATAATGAAAGAGCACAAAAATCCAAAGGTGCTTAGCGAGGGTATTCTTTGGATGGTTTCTGCCGTTGAGGACTTTGGGATCTCCAATTTAAAGCTAAAGgt---ttgcttagcttttcctggttgtgctatacttacaatgtcactggacactcgt----tcttagtagccttcttgttccag----------------
 || ||||| ||||| || ||||| ||||| ||||| ||||| ||| | |||||||||||||| ||||| || |||||  ||||  || ||||||| |||||   ||   |   ||| |     | |   ||| ||    ||| | ||||   |  |    | | ||       | || | |||                
GATCATGAAGGAGCATAAGAATCCCAAGGTTCTTAGTGAGGGAATTTTGTGGATGGTTTCTGCTGTTGAAGATTTTGGTGTCTCACATATAAAGCTTAAGgtgcattatctgaatttacaaaaatattagatattttatttgttattggaagtttctatggtttgagggcgagccctggtgcagcggtaaagttgtgcct

upper sequence: LOC_Os01g60040.2 (Oryza sativa), 5'ss of exon 22
lower sequence: GLYMA20G32430.1 (Glycine max), 5'ss of exon 22
AATAATGAAAGAGCACAAAAATCCAAAGGTGCTTAGCGAGGGTATTCTTTGGATGGTTTCTGCCGTTGAGGACTTTGGGATCTCCAATTTAAAGCTAAAGgt---ttgcttagcttttcctggttgtgctatactta----caatgtcactgg--acactcgttcttagtagccttcttgttccag-------------------
 ||  |||| ||||| || ||||| ||||| ||||| ||||| ||| | |||||||||||||| ||||| || |||||  ||||  || ||||||| |||||   ||   |   ||| | |  || |   ||| ||        | |   |    ||| |  || || | ||  |   || |  |                    
GATCTTGAAGGAGCATAAGAATCCTAAGGTTCTTAGTGAGGGAATTTTGTGGATGGTTTCTGCTGTTGAAGATTTTGGTGTCTCACATATAAAGCTTAAGgtgcattatctgaatttacatatttttaagatattttatttttgtattttttattacattttttgttggaagtttctatggtttaatgtaaatcctgttttgcag

upper sequence: LOC_Os01g60040.2 (Oryza sativa), 5'ss of exon 22
lower sequence: Vv10s0116g00460.t01 (Vitis vinifera), 5'ss of exon 13
AATAATGAAAGAGCACAAAAATCCAAAGGTGCTTAGCGAGGGTATTCTTTGGATGGTTTCTGCCGTTGAGGACTTTGGGATCTCCAATTTAAAGCTAAAGgtttgcttagct-tttcctggttgtgctatacttaca-atgtcactggacactcgttcttagtagccttcttgttccag----------------------------------------------------
||| |||||||||||||| ||||||||||| ||||| ||||| ||  | ||||||||||| || ||||| ||||||||  | ||  |||| || |||||||| | | ||  | ||| || ||  || |||   ||   ||||   |   ||    |  |  ||    |   |  |  |                                                     
AATCATGAAAGAGCACAAGAATCCAAAGGTCCTTAGTGAGGGCATCTTGTGGATGGTTTCAGCAGTTGAAGACTTTGGTGTTTCACATTTGAAACTAAAGgtgttcctaattcttttcttgtgttgttatggctattcatgtttgtttccatctttggtaggtgttatcaattctttacatcctgattacttacttgacaaataaatgagaagccgtttttattctcgcag