1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GCAACAAATAAGGTAATTGAGCTGGTAGTTGACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCTgtaagtttttaaagcgatcttgtatatttgttgcattttaccaatcaacaggagaccagcatcgtgctaatagtgtgttgttaatgtgtttaacctcataatctgatttatccttaccatttcag
species | Oryza sativa |
transcript | LOC_Os12g24550.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: ACAGATGGTCTGACCCGGACAAGCGCACTCGGAAGTGTGCATGCTCTGCT GTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGGEST: gi|88689953|gb|CI734032.1|CI734032
genomic: ACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCTgtaagttttt ... accatttcagGTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGG
EST: ACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCT GTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGGEST: gi|88690870|gb|CI734949.1|CI734949
genomic: ACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCTgtaagttttt ... accatttcagGTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGG
EST: ACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCT GTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGGEST: gi|58677169|gb|CK065856.1|CK065856
genomic: ACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCTgtaagttttt ... accatttcagGTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGG
EST: ACAGATGCTCTGACCCGGAGAAGCGCACTCGGAAGTTTGCATGCTTTGCT GTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGGEST: gi|88691368|gb|CI733951.1|CI733951
genomic: ACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCTgtaagttttt ... accatttcagGTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGG
EST: ACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCT GTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGGEST: gi|88690741|gb|CI734820.1|CI734820
genomic: ACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCTgtaagttttt ... accatttcagGTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGG
EST: ACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCT GTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGGEST: gi|88689600|gb|CI733176.1|CI733176
genomic: ACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCTgtaagttttt ... accatttcagGTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGG
EST: ACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCT GTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGGEST: gi|88690572|gb|CI734651.1|CI734651
genomic: ACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCTgtaagttttt ... accatttcagGTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGG
EST: ACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCT GTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGG
genomic: ACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCTgtaagttttt ... accatttcagGTAGGAAATGCTGCTTATCACAACGACATGCTATATGAAGAACTTAGACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAACAAATAAGGTAATTGAGCTGGTAGTTGACAGATGCTCTGACCCGGACAAGCGCACTCGGAAGTTTGCATGCTTTGCTgtaagtttttaaagcgatcttgtatatttgttgcattttaccaatcaacaggagaccagcatcgtgctaatagtgtgttgttaatgtgtttaacctcataatctgatttatccttaccatttcag
- - - - - - - - - - - - - - - - CAGATG