1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgttaatacaagttggaggagatttctacaccaggtactaattctctatctcaatgacttttgcag
species | Oryza sativa |
transcript | LOC_Os12g04990.3 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88512322|gb|CI439828.1|CI439828
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: CACATTAGAAAATGGTCCCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAGGAAATCGCAGATATGEST: gi|86534809|gb|CI175015.1|CI175015
genomic: CACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|3767955|gb|AU031982.1|AU031982
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGANCCTTTCACATTANAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|29625658|gb|CB630669.1|CB630669
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|89185151|gb|CI050885.1|CI050885
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88487313|gb|CI424584.1|CI424584
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGGACCTTTCACATTAGGAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|29622085|gb|CB627096.1|CB627096
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|29626658|gb|CB631669.1|CB631669
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|86862496|gb|CI345563.1|CI345563
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|313081138|gb|HO213724.1|HO213724
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|25806439|gb|CA762400.1|CA762400
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88475891|gb|CI413162.1|CI413162
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: CCTTTCACATTAGGAAATGGTCCCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAGGGAAATCGCAGATATEST: gi|86870514|gb|CI320610.1|CI320610
genomic: CCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAA-AGAAATCGCAGATAT
EST: TTGCTGAACCTTTCACATTAGAAAAT-GTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88273599|gb|CI394005.1|CI394005
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88509891|gb|CI437397.1|CI437397
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGGAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGGTAAGGCATACTTTGCAAAAGGAATCGCAGATATGEST: gi|89184059|gb|CI046624.1|CI046624
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|86851406|gb|CI314004.1|CI314004
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: ACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCCCAGATATGEST: gi|88907984|gb|CI090580.1|CI090580
genomic: ACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|86477377|gb|CI120010.1|CI120010
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|29665115|gb|CB661390.1|CB661390
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88510117|gb|CI437623.1|CI437623
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|86869068|gb|CI335635.1|CI335635
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88479955|gb|CI417226.1|CI417226
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TCACATTAGGAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88507520|gb|CI435026.1|CI435026
genomic: TCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: ACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|29674288|gb|CB670563.1|CB670563
genomic: ACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88508926|gb|CI436432.1|CI436432
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCCCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAGGAAATCGCAGATATGEST: gi|88470238|gb|CI407509.1|CI407509
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|86851191|gb|CI312592.1|CI312592
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88489221|gb|CI426493.1|CI426493
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: GGTCCCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGGTAAGGCATACTTTGCAAAGGAAATCGCAGATATGEST: gi|88515234|gb|CI442888.1|CI442888
genomic: GGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88439527|gb|CI551761.1|CI551761
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88516238|gb|CI443892.1|CI443892
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88482794|gb|CI420065.1|CI420065
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: AACCTTTCACATTAGGAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCGAAAGAAATCGCAGATATGEST: gi|86841829|gb|CI337476.1|CI337476
genomic: AACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATAGCTTTGCAAAAGAAATCGCAGATATEST: gi|88483012|gb|CI420283.1|CI420283
genomic: TTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATA-CTTTGCAAAAGAAATCGCAGATAT
EST: TGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGGTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88906977|gb|CI376049.1|CI376049
genomic: TGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: CTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATGEST: gi|88474360|gb|CI411631.1|CI411631
genomic: CTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
EST: ACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAG GTCAAAAGACCGCAAGGTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
genomic: ACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgt ... acttttgcagGTCAAAAGACCGCAAGCTAAGGCATACTTTGCAAAAGAAATCGCAGATATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCACATTAGAAAATGGTCTCCTCACCCCAACTTTCAAGgtaggcccgttaatacaagttggaggagatttctacaccaggtactaattctctatctcaatgacttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC