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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATGTTGTATGGTTATACACCTTTTAGAGGAAAAACGAGGCAACGGACATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaatcaagcgtcattttttttaagttggagaagttaaatcggtttgagttttcaggtcagcctagcggcgaggcagctaatgtataggttgctacatag

Basic information

species Oryza sativa
transcript LOC_Os11g01140.3
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g01140.3 (Oryza sativa), 5'ss of exon 21
lower sequence: GRMZM2G001457_T01 (Zea mays), 5'ss of exon 2
TGAAATGTTGTATGGTTATACACCTTTTAGAGGAAAAACGAGGCAACGGACATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaatcaagcgtcattttttttaagttggagaagttaaatcggtttgagttttcaggtcagcctagcggcgaggcagctaatgtataggttgctacatag
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TGAGATGTTATATGGTTATACACCGTTCAGAGGGAAAACAAGACAAAGGACATTTGCTAATATTCTGCACAAGGATATCAGATTTCCTGCGAGCATACAGgtaa-taataaaaacatttattctagtaggtgagcgttgtggcaaatgtttgtaatgt-atatatgttaattgtag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86889483|gb|CI317283.1|CI317283
EST:     ATTTGCTAATATCTTGCAGCAAGGATATCAGATTTCCTGCTAGTATATCG                         GGATCCTGCCAACAGGCTAGGGTCCTACGA-GGAGCCAATGAGATAAAA-G
genomic: ATTTGCTAATATCTTGCA-CAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... tgctacatagGGATCCTGCCAACAGGCTAGGGTCCTACGAGGGAGCCAATGAGATAAAAGG