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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGAAAGATGAGTTCCTGCGTTCCAGAGATTATCCTCAATGCCCTCCAACTTCTCATCTGTTCCAGCGTTTCCGGGAGTTGGGATATGCATGCATAAAgtatggtcaactatgctctctatttttttttctgaaacaggataccatcttgtcctgatgtctcaactgcaaatatttgtttgaaatgattttgattaaataatttctctatgctttacaag

Basic information

species Oryza sativa
transcript LOC_Os09g24260.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g24260.1 (Oryza sativa), 5'ss of exon 21
lower sequence: GRMZM2G150772_T01 (Zea mays), 5'ss of exon 18
TCTTGAAAGATGAGTTCCTGCGTTCCAGAGATTATCCTCAATGCCCTCCAACTTCTCATCTGTTCCAGCGTTTCCGGGAGTTGGGATATGCATGCATAAAgtatggtcaactatgctctctatttttttttctgaaacaggataccatcttgtcctgatgtctcaactgcaaatatttgtttgaaatgattttgattaaataatttctctatgctttacaag
| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||| |||          |||   | ||| |   | || |||       | | ||| || || || |||||  |||        |  | ||| ||  | || |  |   ||| || |    
TTTTGAAAGATGAGTTCCTGCGCTCCAGAGATTATCCTCAATGCCCTCCCACTTCTCATCTGTTCCAGCGTTTCCGAGAATTGGGATATGCATGTATAAAgtatgttca----------ctagcatatttgcctgatcatgattttcgtctctactg-tggctaaattgcaatcattc-------acaacttttatctagta-tagcgtaatggttaag---

upper sequence: LOC_Os09g24260.1 (Oryza sativa), 5'ss of exon 21
lower sequence: GLYMA17G20310.1 (Glycine max), 5'ss of exon 22
TCTTGAAAGATGAGTTCCTGCGTTCCAGAGATTATCCTCAATGCCCTCCAACTTCTCATCTGTTCCAGCGTTTCCGGGAGTTGGGATATGCATGCATAAAgtatggtcaactatgctctctatttttttttctgaaacaggataccatcttgtcctgatgtctcaactgcaaatatttgtttgaaatgattttgattaaataatttctctatgctttacaag
| ||||||||||| || ||||||||||||||||||||  |||| |||||||| |||||| | || || || ||| || ||||||| ||||| || || | ||| ||  || || |   | |  || |  || ||| |  | ||   ||  ||     |||   ||  |      ||||| || || |   | |   |  |  ||||                
TTTTGAAAGATGAATTTCTGCGTTCCAGAGATTATCCAAAATGTCCTCCAACATCTCATTTATTTCATCGATTCAGGCAGTTGGGTTATGCCTGTATCAGgta-ggcaaaataagaaatttgattgtgcttttgatattgaat--tatgatgc----atgctccattttttctaatttgcttaaactatatctttctcgaggatttt---------------

upper sequence: LOC_Os09g24260.1 (Oryza sativa), 5'ss of exon 21
lower sequence: GLYMA05G10590.1 (Glycine max), 5'ss of exon 22
TCTTGAAAGATGAGTTCCTGCGTTCCAGAGATTATCCTCAATGCCCTCCAACTTCTCATCTGTTCCAGCGTTTCCGGGAGTTGGGATATGCATGCATAAAgtatggtcaactatgctctctatttttttttctgaaacaggataccatcttgtcctgatgtctcaactgcaaatatttgtttgaaatgattttgattaaataatttctctatgctttacaag
| ||||||||||| || ||||||||||||||||||||  |||| ||||| || |||||| | || || || ||| || ||||||| ||||| || || | ||| ||  || || |   | |  || |  || ||| |  |        | | |     |   | |||| ||| |   | ||  |  |  | || |||   |                     
TTTTGAAAGATGAATTTCTGCGTTCCAGAGATTATCCAAAATGTCCTCCGACATCTCATTTATTTCATCGATTCAGGCAGTTGGGTTATGCCTGTATCAGgta-ggcaaaataggaaatttgattgtgcttttgatattgtcattgtacatatagaattcattgaactacaa-tgcatattcaatttattgttaatttgctt--------------------

upper sequence: LOC_Os09g24260.1 (Oryza sativa), 5'ss of exon 21
lower sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 23
TCTTGAAAGATGAGTTCCTGCGTTCCAGAGATTATCCTCAATGCCCTCCAACTTCTCATCTGTTCCAGCGTTTCCGGGAGTTGGGATATGCATGCATAAAgtatggtcaactatgctctctatttttttttctgaaacaggataccatcttgtcctgatgtctcaactgcaaatatttgtt-tgaaatgattttgattaaataatttctctatgctttacaag
| || || || |||||| ||||||| ||||| |||||  |||| ||||||||||||| | |||||||| | |||||| || | |||||||| || || |||||  || ||||            || ||| | | |      || |||||       || |   || |  |  || || || |   |||   |  ||| || |  | |  ||||    |    
TTTTAAAGGACGAGTTCTTGCGTTCTAGAGACTATCCAAAATGTCCTCCAACTTCTCTTTTGTTCCAGAGGTTCCGGCAGCTTGGATATGCCTGTATCAAgta-agtaaact------------ttctttgcaggacatatgtagcatctgaat---atctaaaaaatatagttagttattgttggatggcct--attcaa-agctacaatatgtggga----