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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGTTGACATTGGTTCTTCATCCGTTGCACGGAGCATTATTGGTCTAGTCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacctgcaaaatcagacctgaaacaacagtttgcttttttgtttttcatatatttcctatttctaagtggatttaaacaaataaagattctacaa...

Basic information

species Oryza sativa
transcript LOC_Os08g34060.2
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g34060.3 (Oryza sativa), 5'ss of exon 21
lower sequence: GRMZM2G160927_T01 (Zea mays), 5'ss of exon 9
AGATGTTGACATTGGTTCTTCATCCGTTGCACGGAGCATTATTGGTCTAGTCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacctgcaaaatcagacctgaaacaacagtttgcttttttgtttttcatatatt--tcctatttctaagtggatttaaacaaataaagattctacaa---
|||||||||||| ||||| ||||||||||| ||||||||||||||||||||  |||||||||||||| || | |||||||||||||||||||| |||||||||     |  ||| |||   ||    |||| |  |    |||         |||  |   |   |||      |  |  |  |||   |      | ||||   
AGATGTTGACATCGGTTCATCATCCGTTGCCCGGAGCATTATTGGTCTAGTATTGGGATATGTCACAAGCATAGTTGTTGATCTTGCTATTCTTATTGAGgtac---tccccaatatct--cccagtacaataaatataatttcaaaaacatatacttcaattgcattctcgttttcacatggacattcatgtccaccacaatgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|157650644|gb|EX450278.1|EX450278
EST:     TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG                         GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: gi|86870886|gb|CI326712.1|CI326712
EST:     TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG                         GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: gi|88958682|gb|CI096197.1|CI096197
EST:     TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG                         GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTTGCCTA
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: gi|88964786|gb|CI084784.1|CI084784
EST:     TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG                         GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: gi|29630515|gb|CB635524.1|CB635524
EST:     TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG                         GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: gi|29622067|gb|CB627078.1|CB627078
EST:     TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG                         GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: gi|29623531|gb|CB628542.1|CB628542
EST:     TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG                         GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: gi|86430572|gb|CI082995.1|CI082995
EST:     TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG                         GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: gi|12622371|gb|AU172584.1|AU172584
EST:     TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG                         GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: gi|88252721|gb|CI351149.1|CI351149
EST:     TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG                         GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: gi|86596905|gb|CI270701.1|CI270701
EST:     TGTTGATCTTGCTATTCTAATTGAG                         GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
genomic: TGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: gi|86862408|gb|CI345515.1|CI345515
EST:     TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG                         GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: gi|88271238|gb|CI387291.1|CI387291
EST:     TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG                         GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
EST: gi|86499063|gb|CI141696.1|CI141696
EST:     TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAG                         GCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA
genomic: TCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTAATTGAGgtatgaacct ... atgttttcagGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTA