1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
TGACGTTTTCAGATAATTCATTAGTTAAGGAATTCTCAAGAAAAGTGAGAACTTATTCAAGAAAATCTGAGAACGATTCAAGCTGTGAATCTTCCTGATGgtatggatgagcaattgtattcttttcattctcttttcaggcgtgttgatatggtcatgctgatcttttggcaggttggctggaacctgcttaattttgcatctcttgatgaatgatactaaatcacaatgcgacatctctttcttttctgcag
species | Oryza sativa |
transcript | LOC_Os08g01920.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: ACTTATTCAAGAAAATCTAAGAACGATTCAAGCTGTGAATCTTCCTGATG GATATGCTATGATAATCTCACTGAGAGGGTAGATTCTAGACATGGAGGAACEST: gi|88537024|gb|CI464833.1|CI464833
genomic: ACTTATTCAAGAAAATCTGAGAACGATTCAAGCTGTGAATCTTCCTGATGgtatggatga ... ttttctgcagGATATGCTATGATAATCTCACTGAGAGGGTAGATTCTAGACATGGAGGAAC
EST: ACTTATTCAAGAAAATCTGAGGACGATTCAAGCTGTGAATCTTCCTGATG GATATGCTATGATAATCTCACTGAGAGGGTAGATTCTAGACATGGAGGAACEST: gi|88488160|gb|CI425431.1|CI425431
genomic: ACTTATTCAAGAAAATCTGAGAACGATTCAAGCTGTGAATCTTCCTGATGgtatggatga ... ttttctgcagGATATGCTATGATAATCTCACTGAGAGGGTAGATTCTAGACATGGAGGAAC
EST: ACTTATTCAAGAAAATCTGAGAACGATTCAAGCTGTGAATCTTCCTGATG GATATGGTATGATAATCTCACTGAGAGGGTAGATTCTAGACATGGAGGAACEST: gi|88474579|gb|CI411850.1|CI411850
genomic: ACTTATTCAAGAAAATCTGAGAACGATTCAAGCTGTGAATCTTCCTGATGgtatggatga ... ttttctgcagGATATGCTATGATAATCTCACTGAGAGGGTAGATTCTAGACATGGAGGAAC
EST: ACTTATTCAAGAAAATCTGAGAACGATTCAAGCTGTGAATCTTCCTGATG GATATGCTATGATAATCTCACTGAGAGGGTAGATTCTAGACATGGAGGGACEST: gi|88505012|gb|CI432518.1|CI432518
genomic: ACTTATTCAAGAAAATCTGAGAACGATTCAAGCTGTGAATCTTCCTGATGgtatggatga ... ttttctgcagGATATGCTATGATAATCTCACTGAGAGGGTAGATTCTAGACATGGAGGAAC
EST: ACTTATTCAAGGAAATCTGAGAACGATTCAAGCTGTGAATCTTCCTGATG GATATNCTATGATAATCTCACTGAGAGGGTAGATTCTAGACATGGAGGAACEST: gi|87008550|gb|CI315008.1|CI315008
genomic: ACTTATTCAAGAAAATCTGAGAACGATTCAAGCTGTGAATCTTCCTGATGgtatggatga ... ttttctgcagGATATGCTATGATAATCTCACTGAGAGGGTAGATTCTAGACATGGAGGAAC
EST: ACTTATTCAAGAAAATCTGAGAACGATTCAAGCTGTGAATCTTCCTGATG GATATGCTATGATAATCTCACTGAGAGGGTAGATTCTAGACATGGAGGAACEST: gi|88480148|gb|CI417419.1|CI417419
genomic: ACTTATTCAAGAAAATCTGAGAACGATTCAAGCTGTGAATCTTCCTGATGgtatggatga ... ttttctgcagGATATGCTATGATAATCTCACTGAGAGGGTAGATTCTAGACATGGAGGAAC
EST: ACTTATTCAAGAAAATCTGAGAACGATTCAAGCTGTGAATCTTCCTGATG GATATGCTATGATAATCTCACTGAGAGGGTAGATTGTAGACATGGAGGAAC
genomic: ACTTATTCAAGAAAATCTGAGAACGATTCAAGCTGTGAATCTTCCTGATGgtatggatga ... ttttctgcagGATATGCTATGATAATCTCACTGAGAGGGTAGATTCTAGACATGGAGGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACGTTTTCAGATAATTCATTAGTTAAGGAATTCTCAAGAAAAGTGAGAACTTATTCAAGAAAATCTGAGAACGATTCAAGCTGTGAATCTTCCTGATGgtatggatgagcaattgtattcttttcattctcttttcaggcgtgttgatatggtcatgctgatcttttggcaggttggctggaacctgcttaattttgcatctcttgatgaatgatactaaatcacaatgcgacatctctttcttttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG