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21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' |
GAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAGgtatggcgtgatttttttttcttgaaccaataacattcttgtttctatgatattatctttacctggaatcttttgcgtacag
species | Oryza sativa |
transcript | LOC_Os07g06950.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAG CTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACTEST: gi|66922652|gb|CX109500.1|CX109500
genomic: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAGgtatggcgtg ... ttgcgtacagCTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACT
EST: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAG CTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACTEST: gi|58659867|gb|CK048547.1|CK048547
genomic: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAGgtatggcgtg ... ttgcgtacagCTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACT
EST: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTGGCCAG CTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACTEST: gi|27577375|gb|CB000070.1|CB000070
genomic: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAGgtatggcgtg ... ttgcgtacagCTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACT
EST: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAG CTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACTEST: gi|58667338|gb|CK056024.1|CK056024
genomic: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAGgtatggcgtg ... ttgcgtacagCTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACT
EST: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAG CTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACTEST: gi|58656552|gb|CK045232.1|CK045232
genomic: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAGgtatggcgtg ... ttgcgtacagCTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACT
EST: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAG CTGGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACTEST: gi|58674203|gb|CK062889.1|CK062889
genomic: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAGgtatggcgtg ... ttgcgtacagCTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACT
EST: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAG CTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACTEST: gi|58654004|gb|CK042684.1|CK042684
genomic: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAGgtatggcgtg ... ttgcgtacagCTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACT
EST: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGGCAG CTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACTEST: gi|58658981|gb|CK047661.1|CK047661
genomic: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAGgtatggcgtg ... ttgcgtacagCTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACT
EST: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCGTGCCAG CTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACTEST: gi|163920232|gb|EG710577.1|EG710577
genomic: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAGgtatggcgtg ... ttgcgtacagCTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACT
EST: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAG CTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACT
genomic: ATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAGgtatggcgtg ... ttgcgtacagCTTGAAGATGGTGACATCGTTTGTTTTCAAAAATCTCCAAAGCCAGATACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAGgtatggcgtgatttttttttcttgaaccaataacattcttgtttctatgatattatctttacctggaatcttttgcgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT