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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTTGATAGACCAAGCAATTCGGGTCCTCAGAAGACGGAACTTCTCTGTTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGgtaatgggtacttgcggtcttttccccatgtaattatgatctgcattgataggtttattaacaatgcattttactgcaaacctcatcccagtgacatgga...

Basic information

species Oryza sativa
transcript LOC_Os06g26234.1
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88485603|gb|CI422874.1|CI422874
EST:     AATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAG                         GGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
genomic: AATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGgtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
EST: gi|89193939|gb|CI018257.1|CI018257
EST:     TT-A-ATCTGAACTCTTGCAAACTTACAGATTCGCATGGCAAAAACTGAG                         GGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
genomic: TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGgtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
EST: gi|88380936|gb|CI523507.1|CI523507
EST:     TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAG                         GGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
genomic: TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGgtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
EST: gi|88905996|gb|CI089582.1|CI089582
EST:     TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAG                         GGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
genomic: TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGgtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
EST: gi|88474382|gb|CI411653.1|CI411653
EST:     GAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAG                         GGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
genomic: GAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGgtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
EST: gi|88478055|gb|CI415326.1|CI415326
EST:     AACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAG                         GGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
genomic: AACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGgtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
EST: gi|86872605|gb|CI325229.1|CI325229
EST:     TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAG                         GGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
genomic: TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGgtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
EST: gi|88282952|gb|CI404200.1|CI404200
EST:     AATATGTGAACTCTTGCAAACTTNAAGATTCGCATGGCAAAAACTGAGG                         GGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCA
genomic: AATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGA-Ggtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCA
EST: gi|86868828|gb|CI334200.1|CI334200
EST:     TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAG                         GGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
genomic: TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGgtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
EST: gi|58681802|gb|CK070489.1|CK070489
EST:     TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAG                         GGGAAAAGAACACCACCGTAGTGAG-G-ATCCTTCAGGTATGAATGTCCAT
genomic: TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGgtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
EST: gi|88438943|gb|CI531123.1|CI531123
EST:     TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAG                         GGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
genomic: TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGgtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
EST: gi|29639222|gb|CB644231.1|CB644231
EST:     TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAG                         GGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
genomic: TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGgtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
EST: gi|29639178|gb|CB644187.1|CB644187
EST:     TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAG                         GGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
genomic: TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGgtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
EST: gi|88472480|gb|CI409751.1|CI409751
EST:     TAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGGCAAAAACTGAG                         GGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
genomic: TAATATCTGAACTCTTGCAAACTTAAAGATTCGCAT-GGCAAAAACTGAGgtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
EST: gi|88274273|gb|CI394679.1|CI394679
EST:     TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAG                         GGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT
genomic: TTAATATCTGAACTCTTGCAAACTTAAAGATTCGCATGGCAAAAACTGAGgtaatgggta ... taatcttcagGGGAAAAGAACACCACCGTAGTGAGAGGATCCTTCAGGTATGAATGTCCAT