1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
AAATACCAAAAACAATCATCTCTCTTGTCAAAGCTTACCCGTCAACTTAGTGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttactatactttcaatgcctgagaagtaatagcaaatacaattgtatggtattttacatctcctttgtaactagttgttaatgttgttcattac...
species | Oryza sativa |
transcript | LOC_Os06g13820.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: GGTCCATGACAACAGGGCTGCTTCTTATGCCAAGGATATCTCTGAAGTTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|89190153|gb|CI392203.1|CI392203
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGA-GTCTGCCTTCGEST: gi|29662868|gb|CB659143.1|CB659143
genomic: TGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|27921374|gb|CB097182.1|CB097182
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|88221475|gb|CI221431.1|CI221431
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|29614012|gb|CB619025.1|CB619025
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|87023303|gb|CI272131.1|CI272131
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|87027749|gb|CI274313.1|CI274313
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|87015008|gb|CI273406.1|CI273406
genomic: TCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCEST: gi|86430557|gb|CI082980.1|CI082980
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCC-GGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTC
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|86482222|gb|CI124855.1|CI124855
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|88198327|gb|CI198177.1|CI198177
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: CTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|86430146|gb|CI082569.1|CI082569
genomic: CTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|29625430|gb|CB630441.1|CB630441
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|218497504|gb|FG955306.1|FG955306
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|88841689|gb|CI080945.1|CI080945
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|29622848|gb|CB627859.1|CB627859
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|88532772|gb|CI461403.1|CI461403
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: CTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|86482007|gb|CI124640.1|CI124640
genomic: CTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|25798429|gb|CA754390.1|CA754390
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCNATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|88197116|gb|CI196966.1|CI196966
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCCATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|66912617|gb|CX099465.1|CX099465
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|87040350|gb|CI194972.1|CI194972
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|86827768|gb|CI272958.1|CI272958
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: GCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCGEST: gi|86898985|gb|CI296187.1|CI296187
genomic: GCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
EST: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTG AGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATCGGAGGTCTGCCTTCG
genomic: TGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttac ... tcatttgcagAGAGCCCCCGGACACCCAACCGCCCAGGTGAGGATTGGAGGTCTGCCTTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATACCAAAAACAATCATCTCTCTTGTCAAAGCTTACCCGTCAACTTAGTGTCCATGACAACAGGGCTGCTTCTTATGCCAATGATATCTCTGAAGCTGgtaagcttactatactttcaatgcctgagaagtaatagcaaatacaattgtatggtattttacatctcctttgtaactagttgttaatgttgttcattac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG