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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTGACACTAATCTCATCCCAAAGATCTCGGACTTTGGACTTGCCAAACTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATTgtaagaatgttttaccacttatcttcttatgattataacatcaatatgaatgctactattaacttgtcttatcatttttaag

Basic information

species Oryza sativa
transcript LOC_Os05g17604.3
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29680540|gb|CB676815.1|CB676815
EST:     CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATT                         GGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGN
genomic: CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATTgtaagaatgt ... catttttaagGGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGG-
EST: gi|29676653|gb|CB672928.1|CB672928
EST:     CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATT                         GGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
genomic: CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATTgtaagaatgt ... catttttaagGGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
EST: gi|29624376|gb|CB629387.1|CB629387
EST:     CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATT                         GGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
genomic: CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATTgtaagaatgt ... catttttaagGGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
EST: gi|29664574|gb|CB660849.1|CB660849
EST:     CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATT                         GGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
genomic: CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATTgtaagaatgt ... catttttaagGGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
EST: gi|29630956|gb|CB635965.1|CB635965
EST:     CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATT                         GGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGNG
genomic: CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATTgtaagaatgt ... catttttaagGGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAG-G
EST: gi|29672836|gb|CB669111.1|CB669111
EST:     CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATT                         GGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
genomic: CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATTgtaagaatgt ... catttttaagGGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
EST: gi|29627532|gb|CB632543.1|CB632543
EST:     CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCGGGCACATT                         GGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
genomic: CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATTgtaagaatgt ... catttttaagGGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
EST: gi|29622648|gb|CB627659.1|CB627659
EST:     CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATT                         GGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
genomic: CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATTgtaagaatgt ... catttttaagGGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
EST: gi|29675944|gb|CB672219.1|CB672219
EST:     CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATT                         GGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
genomic: CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATTgtaagaatgt ... catttttaagGGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
EST: gi|29627200|gb|CB632211.1|CB632211
EST:     CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATT                         GGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
genomic: CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATTgtaagaatgt ... catttttaagGGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
EST: gi|29628147|gb|CB633158.1|CB633158
EST:     CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATT                         GGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC
genomic: CTCTACGATGAGAATCAAACTCATGTGAGCACTAGAATTGCAGGCACATTgtaagaatgt ... catttttaagGGGCTATCTAGCTCCTGAGTATGCAATGAGAGGCCATTTGTCAGAAAAGGC