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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTCAACCCACGATCAAAGGAAGTGATAAAGGGTGCCTATGCCGTGCCTTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaatatttggatggtgtcttaaatcggaaataaaaaataaaaaaaatgttatggtgtctttgttgctcactgccatagtgttatgcaattacag

Basic information

species Oryza sativa
transcript LOC_Os05g08990.1
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86478372|gb|CI121005.1|CI121005
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88838558|gb|CI375106.1|CI375106
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88259382|gb|CI363675.1|CI363675
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|89195040|gb|CI051153.1|CI051153
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88449517|gb|CI538874.1|CI538874
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|12404996|gb|AU166597.1|AU166597
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88376405|gb|CI535509.1|CI535509
EST:     TTCGCTTGCAACTNCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|89178347|gb|CI391526.1|CI391526
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88469884|gb|CI407155.1|CI407155
EST:     TTCGCTTGCAAGTGCAGCGCTGGGGGACAAATTTCAGTTTGAACNCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGGTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|86822597|gb|CI358086.1|CI358086
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGGACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGA-GAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88978056|gb|CI384538.1|CI384538
EST:     TTCGCTTGCAACTGCAGCGCT-GGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTTAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88846703|gb|CI373471.1|CI373471
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88532915|gb|CI461365.1|CI461365
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88451572|gb|CI539363.1|CI539363
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88462808|gb|CI519720.1|CI519720
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGAATTCCGACTCGACGGGTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88507993|gb|CI435499.1|CI435499
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|87022785|gb|CI269721.1|CI269721
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88262438|gb|CI366212.1|CI366212
EST:     TTCGCTTGCAACTCCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88266902|gb|CI368678.1|CI368678
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88470542|gb|CI407813.1|CI407813
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCGTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88508075|gb|CI435581.1|CI435581
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88263378|gb|CI367152.1|CI367152
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|89189666|gb|CI049205.1|CI049205
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88514203|gb|CI441709.1|CI441709
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|86437465|gb|CI119187.1|CI119187
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88547864|gb|CI478192.1|CI478192
EST:     CAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: CAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88848757|gb|CI087279.1|CI087279
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88464199|gb|CI532134.1|CI532134
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88262244|gb|CI365820.1|CI365820
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|86487083|gb|CI129716.1|CI129716
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|89178762|gb|CI391760.1|CI391760
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88320259|gb|CI520803.1|CI520803
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88262431|gb|CI366205.1|CI366205
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|86865746|gb|CI335445.1|CI335445
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAAGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|87022805|gb|CI269741.1|CI269741
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88276730|gb|CI397532.1|CI397532
EST:     GGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: GGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88555435|gb|CI485692.1|CI485692
EST:     TGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88971448|gb|CI017762.1|CI017762
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88323184|gb|CI550863.1|CI550863
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|87029369|gb|CI250302.1|CI250302
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88274867|gb|CI388325.1|CI388325
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88471089|gb|CI408360.1|CI408360
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88473778|gb|CI411049.1|CI411049
EST:     TTCGCTTGCAACTGCAGCNCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|88433650|gb|CI557386.1|CI557386
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|86481762|gb|CI124395.1|CI124395
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
EST: gi|86481706|gb|CI124339.1|CI124339
EST:     TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCG                         GTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA
genomic: TTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 48 (upstream exon), 46 (downstream exon)
Score: 2

GATCTCAACCCACGATCAAAGGAAGTGATAAAGGGTGCCTATGCCGTGCCTTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaata ... gcaattacagGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAACAGAACCGTTACTCTACGGGATTCCTATGGAAAAGCTGGACCCAAGTGATC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCTCAACCCACGATCAAAGGAAGTGATAAAGGGTGCCTATGCCGTGCCTTCGCTTGCAACTGCAGCGCTGGGGGACAAATTTCAGTTTGAACGCCTCGgtaaacaatatttggatggtgtcttaaatcggaaataaaaaataaaaaaaatgttatggtgtctttgttgctcactgccatagtgttatgcaattacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG