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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctctaaacttcatgatttttccttctgcagagccattgatcgtaaaccatttatcctgtttgtag

Basic information

species Oryza sativa
transcript LOC_Os05g07130.2
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g07130.2 (Oryza sativa), 5'ss of exon 21
lower sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 20
ACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctctaaacttcatgattttt---------------ccttctgcagagcca-ttgatcgtaaaccatttatcctgtttgtag
 |||||||| || ||||| ||||||||||||||||| |||||||| || || || || || |||||||||    | | || ||||  | |               |   | ||||| | | ||  |  | ||| |||| |||  ||  |||
GCTGGAACCCGTCATCATCGAGCTAGAACGCCAGCGTGCACCAGTGGTTGTCATATCTCATCAGgtaaattgtcatagttgatgaaatattggaaagttggagcgcggacagcagaactagttagttttgaactatttgtcccattgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58611022|gb|CK038734.1|CK038734
EST:     TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAG                         GCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
genomic: TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
EST: gi|86850852|gb|CI338828.1|CI338828
EST:     CATTGAGCTAGAACGCCAGCGAGCACCACGTAGTCGTTATTTCCCACCAG                         GCTGTATTGCGGGCGCTATATGCATATTTCGCTTACAGGCCTCTGAGGGAA
genomic: CATTGAGCTAGAACGCCAGCGAGCACCA-GTAGTCGTTATTTCCCACCAGgtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
EST: gi|29629510|gb|CB634519.1|CB634519
EST:     TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAG                         GCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
genomic: TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
EST: gi|29616012|gb|CB621024.1|CB621024
EST:     TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAG                         GCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
genomic: TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
EST: gi|16578926|gb|BI813021.1|BI813021
EST:     TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAG                         GCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
genomic: TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
EST: gi|86842389|gb|CI335281.1|CI335281
EST:     TGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAG                         GCTGTATTACGGGCGCTATATGCATATTTCGCTGACAGGGCCTCTGAGGGA
genomic: TGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACA-GGCCTCTGAGGGA
EST: gi|86838836|gb|CI330278.1|CI330278
EST:     CATTGAGCTAGAACGCCAGCGAGCACCAGTAGGTCGTTATTTCCCACCAGG                         GCTGTATTGCGGGCGCTATATGCATATTTCCCTGACAGGCCTCTGA-GGA
genomic: CATTGAGCTAGAACGCCAGCGAGCACCAGTA-GTCGTTATTTCCCACCA-Ggtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGA
EST: gi|29612782|gb|CB617795.1|CB617795
EST:     TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAG                         GCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
genomic: TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
EST: gi|29615977|gb|CB620989.1|CB620989
EST:     TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAG                         GCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
genomic: TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
EST: gi|86868850|gb|CI334222.1|CI334222
EST:     GCGAGCACCAGTAGTCGTTATTTCCCACCAG                         GCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
genomic: GCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
EST: gi|86853669|gb|CI330520.1|CI330520
EST:     TCATTGAGGTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAG                         GCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGCCCTCTGAGGGAA
genomic: TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
EST: gi|88844562|gb|CI020409.1|CI020409
EST:     TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAG                         GCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
genomic: TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
EST: gi|29615975|gb|CB620987.1|CB620987
EST:     TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAG                         GCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
genomic: TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
EST: gi|29616052|gb|CB621064.1|CB621064
EST:     TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAG                         GCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
genomic: TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA
EST: gi|86869030|gb|CI335597.1|CI335597
EST:     TCATTGAGCTA-AACGCCAGCGAGCACCACTAGTCGTTATTTCCCACCAG                         GCTGGATTGCGGGCGCTATATCCATATTTCGCTCACAGGCCTCTGAGGGAA
genomic: TCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTTATTTCCCACCAGgtaaatctct ... ctgtttgtagGCTGTATTGCGGGCGCTATATGCATATTTCGCTGACAGGCCTCTGAGGGAA