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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCATATTCTGATGAAAAAAGTGAGATTGAGGAACTCTCCATGGTTGCGCTATCTGGATGCATTTGGTTGCAGGCTTTTGTTGTGACACTGGACACAAAgtaagttctcactcgtgcacttcatgaggattggattgtgaatcactgaaatcatcttttgcttcttcag

Basic information

species Oryza sativa
transcript LOC_Os04g28460.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g28460.1 (Oryza sativa), 5'ss of exon 21
lower sequence: GRMZM2G037335_T02 (Zea mays), 5'ss of exon 1
GTGCATATTCTGATGAAAAAAGTGAGATTGAGGAACTCTCCATGGTTGCGCTATCTGGATGCATTTGGTTGCAGGCTTTTGTTGTGACACTGGACACAAAgtaagttctcactcgtgcacttcatgaggat--tggattg--tgaatcactgaaatcatcttttgcttcttcag------------------------------------------------------------------
| || || || ||||| |||||||||||  ||||||| || ||||| || || || || ||||||||||| |||||||||||||||||| |||| |||||||||||| |||   | |      | |   ||    || ||  |   |||   | || |  | || ||| |                                                                      
GCGCCTACTCAGATGAGAAAAGTGAGATGCAGGAACTGTCAATGGTAGCACTGTCCGGTTGCATTTGGTTACAGGCTTTTGTTGTGACAATGGATACAAAgtaagttgtcatcagaggcggcaacggatatatcagaatgatttgttcatccagatgaaatgttacttttctgtttatttccttcggcttttttgctcgcgcatgtgcctagactgacgttgtcctctctgtgccttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87020013|gb|CI299411.1|CI299411
EST:     CTATCTGGATGCATTTGGTTGCAGGCTTTTGTTGTGACACTGGACACAAA                         CTCATTCACTTATCCGCAAATCATTCTCATATGGGGAAACTTTATCGCCTT
genomic: CTATCTGGATGCATTTGGTTGCAGGCTTTTGTTGTGACACTGGACACAAAgtaagttctc ... gcttcttcagCTCATTCACTTATCCGCAAATCATTCTCATATGGGGAAACTTTATCGCCTT