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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAGTTCGGCCATTAATTCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttcgtttagttacatggaattgtttttctgatttccaaaaatgatagaagtggtagaagagaattgtgttggtttatttaaagtttacacaaa...

Basic information

species Oryza sativa
transcript LOC_Os04g14654.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g14654.1 (Oryza sativa), 5'ss of exon 21
lower sequence: GRMZM2G003734_T01 (Zea mays), 5'ss of exon 21
GGTAGTTCGGCCATTAATTCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattt-tcgtttagttaca-tggaattgtttttctgatttccaaaaatgatagaagtggtagaagagaattgtgttggtttatttaaagtttacacaaa
||| ||| | | |||||||| |||  ||| ||||| | |||||| |||  |||||||||||||||||||||||||  ||  |   | ||| |  ||   |       ||     ||   || |||   || || | |        |||  |   ||   |  || |||||
GGTGGTTTGACAATTAATTCATCACCGGAGGTACATCCAGGTTTAGGGGCTCAACAGAGTATTGACAGgtaaattcatccctgtataacaattcaaacatgacagaaatgattgaagtggacagagagggaaggatatggacaccttg--tggcttgttgactatacaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86866302|gb|CI336927.1|CI336927
EST:     AACAGAGTATTGACAG                         GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
genomic: AACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: gi|86599219|gb|CI355836.1|CI355836
EST:     TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAG                         GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
genomic: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: gi|88269427|gb|CI380725.1|CI380725
EST:     TCTTCATTGGATGTACACCAA-GTTT-GGGCTTCAACAGAGTATTGACAG                         GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
genomic: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: gi|88384593|gb|CI554085.1|CI554085
EST:     ATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAG                         GGTTGGANATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
genomic: ATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: gi|58603195|gb|CK013723.1|CK013723
EST:     TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAG                         GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
genomic: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: gi|86846270|gb|CI339858.1|CI339858
EST:     TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAG                         GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
genomic: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: gi|88273383|gb|CI393789.1|CI393789
EST:     TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAG                         GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
genomic: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: gi|88460269|gb|CI529344.1|CI529344
EST:     CTTCATTGGATGTACACCAA-GTTTGNGGGCTTCAACAGAGTATTGACAG                         GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
genomic: CTTCATTGGATGTACACCAAGGTTTG-GGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: gi|88250349|gb|CI348579.1|CI348579
EST:     TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAG                         GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGTTTACTTT
genomic: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
EST: gi|86432914|gb|CI093257.1|CI093257
EST:     TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAG                         GGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT
genomic: TCTTCATTGGATGTACACCAAGGTTTGGGGCTTCAACAGAGTATTGACAGgtaaattttc ... tttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTT