1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
ATTGTAGCAATCATTTATGGAGCTTTGTACTCTGGGCTGTCTTCTTTATCAGTGTCTTCCGTTCCTCATGCACTAAACACTAAAAGgtttgtagttctaatatttcttttgaattccagaattcattctccaaataaagaaaaggtgacttccaatgttcaggaaactagcttgggaacatatcct...
species | Oryza sativa |
transcript | LOC_Os04g10380.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: CTGTCTTCTTTATCAGNGTCTTCCGNTCCTCATGCACTCAACACTAAA-G CTTTAAGAGTAGGGGAAGACA-TGGAATGGGGGGATACTGGCTATTATCCTEST: gi|86250701|gb|CI007564.1|CI007564
genomic: CTGTCTTCTTTATCAGTGTCTTCCGTTCCTCATGCACTAAACACTAAAAGgtttgtagtt ... tcttgtgcagCTTTAAGAGTAGGG-AAGACAATG-AATGGTGG-ATACTGCCTATTATCCT
EST: CTGTCTTCGTTATCAGTGTCTTCCGTTCGTCATGCACTAAACACTATAAG CTTTAAGAGTAGGGAAGACAATGAATGGTGGATACTGCCTATTATCCTCTTEST: gi|86481073|gb|CI123706.1|CI123706
genomic: CTGTCTTCTTTATCAGTGTCTTCCGTTCCTCATGCACTAAACACTAAAAGgtttgtagtt ... tcttgtgcagCTTTAAGAGTAGGGAAGACAATGAATGGTGGATACTGCCTATTATCCTCTT
EST: TGTCTTCTTTATCAGTGTCTTCCGTTCCTCATGCACTAAACACTAAAAG CTTTAAGAGTAGGGAAGACAATGAATGGTGGATACTGCCTATTATCCTCTTEST: gi|29624394|gb|CB629405.1|CB629405
genomic: TGTCTTCTTTATCAGTGTCTTCCGTTCCTCATGCACTAAACACTAAAAGgtttgtagtt ... tcttgtgcagCTTTAAGAGTAGGGAAGACAATGAATGGTGGATACTGCCTATTATCCTCTT
EST: CTGTCTTCTTTATCAGTGTCTTCCGTTCCTCATGCACTCAACACTAAAAG CTTTAAGAGTAGGGAAGACAATGAATGGTGGATACTGCCTATTATCCTCTTEST: gi|58670216|gb|CK058902.1|CK058902
genomic: CTGTCTTCTTTATCAGTGTCTTCCGTTCCTCATGCACTAAACACTAAAAGgtttgtagtt ... tcttgtgcagCTTTAAGAGTAGGGAAGACAATGAATGGTGGATACTGCCTATTATCCTCTT
EST: CTAAACACTAAAAG CTTTAAGAGTAGGGAAGACAATGAATGGTGGATACTGCCTATTATCCTCTT
genomic: CTAAACACTAAAAGgtttgtagtt ... tcttgtgcagCTTTAAGAGTAGGGAAGACAATGAATGGTGGATACTGCCTATTATCCTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTAGCAATCATTTATGGAGCTTTGTACTCTGGGCTGTCTTCTTTATCAGTGTCTTCCGTTCCTCATGCACTAAACACTAAAAGgtttgtagttctaatatttcttttgaattccagaattcattctccaaataaagaaaaggtgacttccaatgttcaggaaactagcttgggaacatatcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa