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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCACAACGTGCAGGTCAAGGTTCTCAGCGAGCAGCTGCTGTTGCTGCGCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttccccaatggcaggtatgacttgtggcctactatttccttcccctgcatatattttaagggtaacaatatcaatttccttcatgtggtgcta...

Basic information

species Oryza sativa
transcript LOC_Os03g24220.3
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g24220.3 (Oryza sativa), 5'ss of exon 21
lower sequence: GRMZM2G081322_T01 (Zea mays), 5'ss of exon 22
CCACCACAACGTGCAGGTCAAGGTTCTCAGCGAGCAGCTGCTGTTGCTGCGCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttccccaatggcaggtatgacttgt-ggcctactatttccttc---ccctgcatatattttaaggg--taacaatatcaatttccttcatgtggtgcta---------------
                  ||||| |||||  |||| ||||||||||| || ||||| |||||||||||||| |||||   |||||| ||||| |||    ||||||| |||||||  ||||||  ||| |    |||||   |||  ||         | | |  |||| |||  |||   |||  || ||  |||  |  | | |               
------------------CAAGGGTCTCAAAGAGCCGCTGCTGTTGCAGCACTGTCCAATGTTTTGACTGCAGAGGG---ATCTCATAGCCCCCGCCACAGTAGGTCGTCCCCAACAGCAGgttagacataccagcctaaattttatttgaagtttcaccttttctttaggggattaattgtatatatgtcactcaacttttacaaaattagatagctagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218486625|gb|FG969617.1|FG969617
EST:     GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAG                         GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
genomic: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttc ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: gi|38568672|gb|CD670887.1|CD670887
EST:     GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAG                         GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
genomic: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttc ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: gi|29669712|gb|CB665987.1|CB665987
EST:     GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAG                         GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
genomic: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttc ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: gi|58673715|gb|CK062401.1|CK062401
EST:     GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAG                         GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
genomic: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttc ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: gi|29669713|gb|CB665988.1|CB665988
EST:     TGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAG                         GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
genomic: TGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttc ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: gi|58672631|gb|CK061317.1|CK061317
EST:     GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAG                         GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
genomic: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttc ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
EST: gi|58612287|gb|CK039999.1|CK039999
EST:     GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAG                         GTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG
genomic: GCTGTCTAATGTTTTGACTGCTGAGGGTTCATCTCAAAGCCCACGCATAGgtaggtcttc ... ccaatttcagGTGATGCAGATACAGCTGAACTAACTCCGTCTGCTGCATCCCCTCTGTCTG