1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
ATTTCCTTCCATGATGTGGATATCGTAACGCCATCTCAAAAGCTATTGGCTACCCAGTTATCTTGTGATGTATCTCAAGGAAAAAGCCTTCTTGTGACTGgtacatcatctggcagcttttcgtcctagcttttatttactttcatgtttacattatatgttctaatatctatcatgctgttttcttaag
species | Oryza sativa |
transcript | LOC_Os01g73530.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: TACCCAGTTATCTTGTGATGTATCTCAAGGAAAAAGCCTTCTTGTGACTG GCCCAAATGGCAGTGGCAAGAGCTCCATTTTTAEST: gi|8955961|gb|BE229765.1|BE229765
genomic: TACCCAGTTATCTTGTGATGTATCTCAAGGAAAAAGCCTTCTTGTGACTGgtacatcatc ... ttttcttaagGCCCAAATGGCAGTGGCAAGAGCTCCATTTTTA
EST: TACCCAGTTATCTTGTGATGTATCTCAAGGAAAAA-CCTTCTTGTGACTG GCCCAAATGGCAGTGGCAAGANCTCCATTTT-AGGGTGCTCCGAAGTTTGTEST: gi|88434594|gb|CI690870.1|CI690870
genomic: TACCCAGTTATCTTGTGATGTATCTCAAGGAAAAAGCCTTCTTGTGACTGgtacatcatc ... ttttcttaagGCCCAAATGGCAGTGGCAAGAGCTCCATTTTTAGGGTGCTCCGAGGTTTGT
EST: TACCCAGTTATCTTGTGATGTATCTCAAGGAAAAAGCCTTCTTGTGACTG GCCCAAATGGCEST: gi|58679369|gb|CK068056.1|CK068056
genomic: TACCCAGTTATCTTGTGATGTATCTCAAGGAAAAAGCCTTCTTGTGACTGgtacatcatc ... ttttcttaagGCCCAAATGGC
EST: TACCCAGTTATCTTGTGATGTATCTCAAGGAAAAAGCCTTCTTGTGACTG GCCCAAATGGCAGTGGCAAGAGCTCCATTTTTAGGGTGCTCCGAGGTTTGTEST: gi|33684550|gb|CF312789.1|CF312789
genomic: TACCCAGTTATCTTGTGATGTATCTCAAGGAAAAAGCCTTCTTGTGACTGgtacatcatc ... ttttcttaagGCCCAAATGGCAGTGGCAAGAGCTCCATTTTTAGGGTGCTCCGAGGTTTGT
EST: TACCCAGTTATCTTGTGATGTATCTCAAGGAAAAAGCCTTCTTGTGACTG GCCCAAATGGCAGTGGCAAGAGCTCCATTTTTAGGGTGCTCCGAGGTTTGTEST: gi|58601488|gb|CK012016.1|CK012016
genomic: TACCCAGTTATCTTGTGATGTATCTCAAGGAAAAAGCCTTCTTGTGACTGgtacatcatc ... ttttcttaagGCCCAAATGGCAGTGGCAAGAGCTCCATTTTTAGGGTGCTCCGAGGTTTGT
EST: TACCCAGTTATCTTGTGATGTATCTCAAGGAAAAAGCCTTCTTGTGACTG GCCCAAATGGCAGTGGCAAGAGCTCCATTTTTAGGGTGCTCCGAGGTTTGT
genomic: TACCCAGTTATCTTGTGATGTATCTCAAGGAAAAAGCCTTCTTGTGACTGgtacatcatc ... ttttcttaagGCCCAAATGGCAGTGGCAAGAGCTCCATTTTTAGGGTGCTCCGAGGTTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCCTTCCATGATGTGGATATCGTAACGCCATCTCAAAAGCTATTGGCTACCCAGTTATCTTGTGATGTATCTCAAGGAAAAAGCCTTCTTGTGACTGgtacatcatctggcagcttttcgtcctagcttttatttactttcatgtttacattatatgttctaatatctatcatgctgttttcttaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA