1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
GCAGTCAAGCAGCTCATTAAGTTGGATGAAAATAGCCCTGACAGTCATCGTTGTTTGgtgagtataaaaaatatggttttcacttaagctattcatttgtatattctgtcagtcgtgataaaatttgttcgacctgtaaattatgtactgtacctac...
species | Oryza sativa |
transcript | LOC_Os01g43030.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: AGCAGCTCATTAAGTTGGATGAAAATAGCCCTGACAGTCATCGTTGTTTG ATAAGGTTTTTCCACAAGATAAACAATCTTCCCTCTCCAGGGACAGATTCTEST: gi|33794849|gb|CF323303.1|CF323303
genomic: AGCAGCTCATTAAGTTGGATGAAAATAGCCCTGACAGTCATCGTTGTTTGgtgagtataa ... gattttgtagATAAGGTTTTTCCACAAGATAAACAATCTTCCCTCTCCAGGGACAGATTCT
EST: AGCAGCTCATTAAGTTGGATGAAAATAGCCCTGACAGTCATCGTTGTTTG ATNAAGGTTTTTCCACAAGATAAACAATCTTCCCTCTCCAGGGACAGATTCEST: gi|88721769|gb|CI745068.1|CI745068
genomic: AGCAGCTCATTAAGTTGGATGAAAATAGCCCTGACAGTCATCGTTGTTTGgtgagtataa ... gattttgtagAT-AAGGTTTTTCCACAAGATAAACAATCTTCCCTCTCCAGGGACAGATTC
EST: GACAGTCATCGTTGTTTG ATAAGGTTTTTCCACAAGATAAACAATCTTCCCTCTCCAGGGACAGATTCTEST: gi|58694649|gb|CK083336.1|CK083336
genomic: GACAGTCATCGTTGTTTGgtgagtataa ... gattttgtagATAAGGTTTTTCCACAAGATAAACAATCTTCCCTCTCCAGGGACAGATTCT
EST: AGCAGCTCATTAAGTTGGATGAAAATAGCCCTGACAGTCATCGTTGTTTG ATAAGGTTTTTCCACAAGATAAACAATCTTCCCTCTCCAGGGACAGATTCT
genomic: AGCAGCTCATTAAGTTGGATGAAAATAGCCCTGACAGTCATCGTTGTTTGgtgagtataa ... gattttgtagATAAGGTTTTTCCACAAGATAAACAATCTTCCCTCTCCAGGGACAGATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGTCAAGCAGCTCATTAAGTTGGATGAAAATAGCCCTGACAGTCATCGTTGTTTGgtgagtataaaaaatatggttttcacttaagctattcatttgtatattctgtcagtcgtgataaaatttgttcgacctgtaaattatgtactgtacctac
- - - - GCAGCT
- - - - CAGCTC
- - - - - AGCTCA
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