1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
CACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttctcacttctcataaccttgcatgctcttaataagttatgaatcatgtgtatgattcccttattaatctctctttccttgctgcaccag
species | Oryza sativa |
transcript | LOC_Os12g04990.3 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|86534809|gb|CI175015.1|CI175015
genomic: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: TCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|29625658|gb|CB630669.1|CB630669
genomic: TCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|89185151|gb|CI050885.1|CI050885
genomic: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|29622085|gb|CB627096.1|CB627096
genomic: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|29626658|gb|CB631669.1|CB631669
genomic: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|313081138|gb|HO213724.1|HO213724
genomic: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|25806439|gb|CA762400.1|CA762400
genomic: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|88273599|gb|CI394005.1|CI394005
genomic: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: GACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|89184059|gb|CI046624.1|CI046624
genomic: GACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: AGATGGACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCCAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|88907984|gb|CI090580.1|CI090580
genomic: AGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|86477377|gb|CI120010.1|CI120010
genomic: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|29665115|gb|CB661390.1|CB661390
genomic: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: CAAGATCTGCTGTCCTGGGTGAGATGGACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|29674288|gb|CB670563.1|CB670563
genomic: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|86851191|gb|CI312592.1|CI312592
genomic: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAG CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTCEST: gi|86841829|gb|CI337476.1|CI337476
genomic: CAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
EST: CTGTCCTGGCTGAGATGGACTCTATT-GAAACGAATCACAC CTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
genomic: CTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttct ... gctgcaccagCTAAGAGGTTTTGAATTTGCCAAAGCTGTTACCCTTGTTGCTGAACCTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGAGGATTTAAGACAGCTTTGTGCTGATCCGAAAGCAAGATCTGCTGTCCTGGCTGAGATGGACTCTATTGGAAAGGAAGCACAGgtttacttctcacttctcataaccttgcatgctcttaataagttatgaatcatgtgtatgattcccttattaatctctctttccttgctgcaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA