1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
TGGTATTCTTGATTGGCGAGCTGGTGGCAGGCAGGGACTGTGTAACCAAATGAAGTGGAATGAATCAGAGGCTTCAATTGGGCGTGTTTTGGCAGTGGAGgtaagcaccgtcttaagccatttttctcagttatcatgggacttccgcatcagcttggtgcaatcaaaacaaagttgaattgatcatatatgttatttag...
species | Oryza sativa |
transcript | LOC_Os10g42439.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: TGAAGTGGAATGAATCAGAGGCTTCAATTGGGCGTGTTTTGGCAGTGGAG GTGCTTCATGCTTTTGCAACGGAAGGCGCACACTGTGCTAAAGTTCGTGAAEST: gi|29638585|gb|CB643594.1|CB643594
genomic: TGAAGTGGAATGAATCAGAGGCTTCAATTGGGCGTGTTTTGGCAGTGGAGgtaagcaccg ... aattatgcagGTGCTTCATGCTTTTGCAACGGAAGGCGCACACTGTGCTAAAGTTCGTGAA
EST: TGAAGTGGAATGAATCAGAGGCTTCAATTGGGCGTGTTTTGGCAGTGGAG GTGCTTCATGCTTTTGCAACGGAAGGCGCACACTGTGCTAAAGTTCGTGAAEST: gi|29630473|gb|CB635482.1|CB635482
genomic: TGAAGTGGAATGAATCAGAGGCTTCAATTGGGCGTGTTTTGGCAGTGGAGgtaagcaccg ... aattatgcagGTGCTTCATGCTTTTGCAACGGAAGGCGCACACTGTGCTAAAGTTCGTGAA
EST: TGAAGTGGAATGAATCAGAGGCTTCAATTGGGCGTGTTTTGGCAGTGGAG GTGCTTCATGCTTTTGCAACGGAAGGCGCACACTGTGCTAAAGTTCGTGAAEST: gi|29622288|gb|CB627299.1|CB627299
genomic: TGAAGTGGAATGAATCAGAGGCTTCAATTGGGCGTGTTTTGGCAGTGGAGgtaagcaccg ... aattatgcagGTGCTTCATGCTTTTGCAACGGAAGGCGCACACTGTGCTAAAGTTCGTGAA
EST: TGAAGTGGAATGAATCAGAGGCTTCAATTGGGCGTGTTTTGGCAGTGGAG GTGCTTCATGCTTTTGCAACGGAAGGCGCACACTGTGCTAAAGTTCGTGAAEST: gi|87031166|gb|CI259746.1|CI259746
genomic: TGAAGTGGAATGAATCAGAGGCTTCAATTGGGCGTGTTTTGGCAGTGGAGgtaagcaccg ... aattatgcagGTGCTTCATGCTTTTGCAACGGAAGGCGCACACTGTGCTAAAGTTCGTGAA
EST: TGAAGTGGAATGAATCAGAGGCTTCAATTGGGCGTGTTTTGGCAGTGGAG GTGCTTCATGCTTTTGCAACGGAAGGCGCACACTGTGCTAAAGTTCGTGAA
genomic: TGAAGTGGAATGAATCAGAGGCTTCAATTGGGCGTGTTTTGGCAGTGGAGgtaagcaccg ... aattatgcagGTGCTTCATGCTTTTGCAACGGAAGGCGCACACTGTGCTAAAGTTCGTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTATTCTTGATTGGCGAGCTGGTGGCAGGCAGGGACTGTGTAACCAAATGAAGTGGAATGAATCAGAGGCTTCAATTGGGCGTGTTTTGGCAGTGGAGgtaagcaccgtcttaagccatttttctcagttatcatgggacttccgcatcagcttggtgcaatcaaaacaaagttgaattgatcatatatgttatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa