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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTGAATACTTTGAATCAAAAGTTATCGAGCAACAGGAAGCTGCACGCAATGGAACTCGGAAACCTGATGCATCAATTGCTAGTAAAGGGCATCTAAGgtaaaatatagttaaatttcaccaacctaaagtatcgtaacttcttagagacttctcttttgcatttatagatatctaggtacagtatactttttataacatcttcactttgtactgactgttctactttgcgtttgcag

Basic information

species Oryza sativa
transcript LOC_Os07g23990.2
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g23990.1 (Oryza sativa), 5'ss of exon 20
lower sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 22
GGCTTGAATACTTTGAATCAAAAGTTATCGAGCAACAGGAAGCTGCACGCAATGGAACTCGGAAACCTGATGCATCAATTGCTAGTAAAGGGCATCTAAGgtaaaatatagttaaatttcaccaacctaaagtatcgtaacttcttagagacttctcttttgcatttatagatatctaggtacagtatactttttataacatcttcactttgtactgactgttctactttgcgtttgcag
||||||| || ||||| || || | | | || || || |||||||| || ||||| ||||| ||||||||||||||||| ||||| ||||| ||||| |||||  ||| | ||||   |   |||  |  | | |  ||  |  || |  | |    | ||||||    |  ||  |   |   | ||| ||| | | |  ||||                                   
GGCTTGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACTCGAAAACCTGATGCATCAATAGCTAGCAAAGGCCATCTTAGgtatgataaaattaa-ccttggcaatgtgga-tctgatacttcattggctaat----tgttgcatcaggaagtacttctctcatgcatattttatttgatgtcttt----------------------------------

upper sequence: LOC_Os07g23990.1 (Oryza sativa), 5'ss of exon 20
lower sequence: GLYMA16G02770.1 (Glycine max), 5'ss of exon 22
GGCTTGAATACTTTGAATCAAAAGTTATCGAGCAACAGGAAGCTGCACGCAATGGAACTCGGAAACCTGATGCATCAATTGCTAGTAAAGGGCATCTAAGgtaaaatatagttaaatttcaccaacctaaagtatcgtaacttcttagagacttctcttttgcatttatagatatctaggtacagtatactttttataacatcttcactttgtactgactgttctactttgcgtttgcag
||||||| || |||||||| || | | | || || || |||||||| || ||||| ||||| ||||||||||||||||| || || ||||| ||||| |||||   || | ||||   |   |||  |  | | |  ||  |  || |  | |    | ||||||    | | |  |   |   | ||| ||| | |    ||||                                   
GGCTTGAGTATTTTGAATCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACTCGAAAACCTGATGCATCAATAGCCAGCAAAGGCCATCTTAGgtatggtaaaattaa-ccttggcaatgtgga-tctgatacttcattggctaat----tgttgcatcaggaaaaacttctctcatgcatattttatttggtgtcttt----------------------------------

upper sequence: LOC_Os07g23990.1 (Oryza sativa), 5'ss of exon 20
lower sequence: Vv15s0046g00740.t01 (Vitis vinifera), 5'ss of exon 22
GGCTTGAATACTTTGAATCAAAAGTTATCGAGCAACAGGAAGCTGCACGCAATGGAACTCGGAAACCTGATGCATCAATTGCTAGTAAAGGGCATCTAAGgtaaaatatagttaaatttcaccaacctaaagtatcgtaacttcttagagacttctcttttgcatttatagatatctaggtacagtatactttttataacatcttcactttgtactgactgttctactttgcgtttgcag
|||| || |||||||| ||||| | | | || || || ||||||||| | ||||| ||||| |||||||||||||| || || || ||||| || ||||||||    |   ||    ||  |      ||  |    | ||   |  |  | |  || |  ||||    || |     ||| ||   |      |   |  |      ||                              
GGCTCGAGTACTTTGAGTCAAAGGCTTTTGAACAGCAAGAAGCTGCAAGAAATGGGACTCGAAAACCTGATGCATCCATAGCCAGCAAAGGCCACCTAAGgtatgccagcattgtccttggc------aagat----tgaccattctgcaattgatcat--gcataagaagttgatagggtgcacagttgcccctgctattttgatgattca----------------------------