1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
AGCGTCACATATCCATCTTGAAAGATAACCCGAAGATTTTCCAGATTGACTCAAGCATTCAAGCAAGAAATGTTGGAGCTGGTTCTGGTGGGTTTTCAAGgtaagtgcttagtttcattaagaaatcacttctataatcttattcagtcaccactgtgcaacccatgtttgaaaacatagcggcacttgaatggtcctat...
species | Oryza sativa |
transcript | LOC_Os07g23880.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: TCAAGCATTCAAGCAAGAAATGTTGGAGCTGGTTCTGGTGGGTTTTCAAG GTTGGTATGTTTGCGAGTTCATCCAACTTTCACACTTCTACACCCAACAGAEST: gi|29672519|gb|CB668794.1|CB668794
genomic: TCAAGCATTCAAGCAAGAAATGTTGGAGCTGGTTCTGGTGGGTTTTCAAGgtaagtgctt ... ccttctgaagGTTGGTATGTTTGCGAGTTCATCCAACTTTCACACTTCTACACCCAACAGA
EST: TCAAGCATTCAAGCAAGAAATGTTGGAGCTGGTTCTGGTGGGTTTTCAAG GTTGGTATGTTTGCGAGTTCATCCAACTTTCACACTTCTACACCCAACAGAEST: gi|29672518|gb|CB668793.1|CB668793
genomic: TCAAGCATTCAAGCAAGAAATGTTGGAGCTGGTTCTGGTGGGTTTTCAAGgtaagtgctt ... ccttctgaagGTTGGTATGTTTGCGAGTTCATCCAACTTTCACACTTCTACACCCAACAGA
EST: TCAAGCATTCAAGCAAGAAATGTTGGAGCTGGTTCTGGTGGGTTTTCAAG GTTGGTATGTTTGCGAGTTCATCCAACTTTCACACTTCTACACCCAACAGAEST: gi|27576881|gb|CA999575.1|CA999575
genomic: TCAAGCATTCAAGCAAGAAATGTTGGAGCTGGTTCTGGTGGGTTTTCAAGgtaagtgctt ... ccttctgaagGTTGGTATGTTTGCGAGTTCATCCAACTTTCACACTTCTACACCCAACAGA
EST: TCAAGCATTCAAGCAAGAAATGTTGGAGCTGGTTCTGGTGGGTTTTCAAG GTTGGTATGTTTGCGAGTTCATCCAACTTTCACACTTCTACACCCAACAGAEST: gi|27577241|gb|CA999935.1|CA999935
genomic: TCAAGCATTCAAGCAAGAAATGTTGGAGCTGGTTCTGGTGGGTTTTCAAGgtaagtgctt ... ccttctgaagGTTGGTATGTTTGCGAGTTCATCCAACTTTCACACTTCTACACCCAACAGA
EST: TCAAGCATTCAAGCAAGAAATGTTGGAGCTGGTTCTGGTGGGTTTTCAAG GTTGGTATGTTTGCGAGTTCATCCAACTTTCACACTTCTACACCCAACAGAEST: gi|29687767|gb|CB684042.1|CB684042
genomic: TCAAGCATTCAAGCAAGAAATGTTGGAGCTGGTTCTGGTGGGTTTTCAAGgtaagtgctt ... ccttctgaagGTTGGTATGTTTGCGAGTTCATCCAACTTTCACACTTCTACACCCAACAGA
EST: TCAAGCATTCAAGCAAGAAATGTTGGAGCTGGTTCTGGTGGGTTTTCAAG GTTGGTATGTTTGCGAGTTCATCCAACTTTCACACTTCTACACCCAACAGA
genomic: TCAAGCATTCAAGCAAGAAATGTTGGAGCTGGTTCTGGTGGGTTTTCAAGgtaagtgctt ... ccttctgaagGTTGGTATGTTTGCGAGTTCATCCAACTTTCACACTTCTACACCCAACAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCGTCACATATCCATCTTGAAAGATAACCCGAAGATTTTCCAGATTGACTCAAGCATTCAAGCAAGAAATGTTGGAGCTGGTTCTGGTGGGTTTTCAAGgtaagtgcttagtttcattaagaaatcacttctataatcttattcagtcaccactgtgcaacccatgtttgaaaacatagcggcacttgaatggtcctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG