1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAGgttgatgaatacttctcttatcttctggaggctataatactgtttctagctttttgcattttttccccacctgacagtttcagattctttgtgctgcaat...
species | Oryza sativa |
transcript | LOC_Os06g13820.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAG TGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGCEST: gi|29614012|gb|CB619025.1|CB619025
genomic: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAGgttgatgaat ... tcattaccagTGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGC
EST: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAG TGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGCEST: gi|29657562|gb|CB653837.1|CB653837
genomic: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAGgttgatgaat ... tcattaccagTGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGC
EST: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAG TGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGCEST: gi|86482222|gb|CI124855.1|CI124855
genomic: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAGgttgatgaat ... tcattaccagTGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGC
EST: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAG TGGGCAAAGCAATGCAAAAATTGAAGAGCTTCCTGCAAGAGGACCATAATGEST: gi|29625430|gb|CB630441.1|CB630441
genomic: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAGgttgatgaat ... tcattaccagTGGGCAAAGCAATGCAAAAATTGAAGAGCTT-CTGCAAGAGGACCATAATG
EST: AGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAG TGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGCEST: gi|218497504|gb|FG955306.1|FG955306
genomic: AGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAGgttgatgaat ... tcattaccagTGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGC
EST: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAG TGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGCEST: gi|29622848|gb|CB627859.1|CB627859
genomic: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAGgttgatgaat ... tcattaccagTGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGC
EST: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAG TGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGCEST: gi|25798429|gb|CA754390.1|CA754390
genomic: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAGgttgatgaat ... tcattaccagTGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGC
EST: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAG TGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGCEST: gi|87040350|gb|CI194972.1|CI194972
genomic: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAGgttgatgaat ... tcattaccagTGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGC
EST: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAG TGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGCEST: gi|86898985|gb|CI296187.1|CI296187
genomic: GTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAGgttgatgaat ... tcattaccagTGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGC
EST: GAAGATATGCTAAACCAGCTATATAGTTCAATAAG TGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGC
genomic: GAAGATATGCTAAACCAGCTATATAGTTCAATAAGgttgatgaat ... tcattaccagTGGGCAAAGCAATGCAAAAATTGAAGAGCTTCTGCAAGAGGACCATAATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATTGTGTTGTGCCAAGTGGAGAAGGCAAAGGAAGATATGCTAAACCAGCTATATAGTTCAATAAGgttgatgaatacttctcttatcttctggaggctataatactgtttctagctttttgcattttttccccacctgacagtttcagattctttgtgctgcaat
- - - - - - - - - GTGGAG
- - - - - - - - - TGGAGA
- - - - - - - - - - GGAGAA
- - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - GGAAGA