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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCGGACGGTGCACAAGCTTACTATGAAACTGAAGCGCGAAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCGgtaaacccatcctgtacaacacaataatgtattcgaatttctttcttttaccattatcatgcaatcctgttgcggcaaatagaagtttcttggattatactgttacattagttttaaatgtggaattgccaggcgatatttgaccaattgtactcattgtttgaattcaaaaatgcag

Basic information

species Oryza sativa
transcript LOC_Os06g04450.1
intron # 20
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86598797|gb|CI355414.1|CI355414
EST:     TCTTCTAGCATAGATGACCCTCCACAATTTATTTCG                         AAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
genomic: TCTTCTAGCATAGATGACCCTCCACAATTTATTTCGgtaaacccat ... aaaaatgcagAAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
EST: gi|86602710|gb|CI357074.1|CI357074
EST:     AAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCG                         AAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
genomic: AAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCGgtaaacccat ... aaaaatgcagAAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
EST: gi|86486040|gb|CI128673.1|CI128673
EST:     AAATTGTCCTGGGACCTTCTAGCATAGATGACGCTCCACAATTTATTTCG                         AAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
genomic: AAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCGgtaaacccat ... aaaaatgcagAAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
EST: gi|88251813|gb|CI349050.1|CI349050
EST:     AAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCG                         AAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
genomic: AAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCGgtaaacccat ... aaaaatgcagAAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
EST: gi|88255329|gb|CI354153.1|CI354153
EST:     GCATAGATGACCCTCCACAATTTATTTCG                         AAGCTG-AGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
genomic: GCATAGATGACCCTCCACAATTTATTTCGgtaaacccat ... aaaaatgcagAAGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCAC
EST: gi|88257802|gb|CI360388.1|CI360388
EST:     AAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCG                         AAGGCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCA
genomic: AAATTGTCCTGGGATCTTCTAGCATAGATGACCCTCCACAATTTATTTCGgtaaacccat ... aaaaatgcagAA-GCTGAAGATGCTAACTGCAGGTGGTGCCAATGACGTCTAAACTTCGCA