1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
ATCACGCAAGAAGGACAAATTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcatttcttctaatattattcagaaaaaacttttcacagttctttagactgcacaatgcaatggaaataatcaattctaccagtacgtcttcagtcttcactaacttgtgatttggtaaaatcctcag
species | Oryza sativa |
transcript | LOC_Os05g07130.2 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAG ACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTEST: gi|86850852|gb|CI338828.1|CI338828
genomic: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcat ... aaatcctcagACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGT
EST: ATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAG ACTGGGACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCACGTAGTCGEST: gi|29629510|gb|CB634519.1|CB634519
genomic: ATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcat ... aaatcctcagACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCA-GTAGTCG
EST: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAG ACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTEST: gi|29616012|gb|CB621024.1|CB621024
genomic: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcat ... aaatcctcagACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGT
EST: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAG ACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTEST: gi|16578926|gb|BI813021.1|BI813021
genomic: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcat ... aaatcctcagACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGT
EST: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGCGATTCAGAG ACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTEST: gi|86838836|gb|CI330278.1|CI330278
genomic: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcat ... aaatcctcagACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGT
EST: ATCGATACCCCCGTGGAGAATCTTACATTGATGTGATTCAGAG ACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGGTCGEST: gi|29612782|gb|CB617795.1|CB617795
genomic: ATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcat ... aaatcctcagACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTA-GTCG
EST: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAG ACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTEST: gi|29615977|gb|CB620989.1|CB620989
genomic: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcat ... aaatcctcagACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGT
EST: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAG ACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTEST: gi|86853669|gb|CI330520.1|CI330520
genomic: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcat ... aaatcctcagACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGT
EST: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAG ACTGGAACCTGTTATCATTGAGGTAGAACGCCAGCGAGCACCAGTAGTCGTEST: gi|88844562|gb|CI020409.1|CI020409
genomic: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcat ... aaatcctcagACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGT
EST: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAG ACTGGAAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGEST: gi|29615975|gb|CB620987.1|CB620987
genomic: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcat ... aaatcctcagACTGG-AACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCG
EST: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAG ACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTEST: gi|29616052|gb|CB621064.1|CB621064
genomic: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcat ... aaatcctcagACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGT
EST: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAG ACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGTEST: gi|86869030|gb|CI335597.1|CI335597
genomic: TTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcat ... aaatcctcagACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGT
EST: CCCCCGT-GAGAATCTTACCTGGATGTGATTCAGAG ACTGGAACCTGTTATCATTGAGCTA-AACGCCAGCGAGCACCACTAGTCGT
genomic: CCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcat ... aaatcctcagACTGGAACCTGTTATCATTGAGCTAGAACGCCAGCGAGCACCAGTAGTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCACGCAAGAAGGACAAATTAAGATATCGATACCCCCGTGGAGAATCTTACCTTGATGTGATTCAGAGgtttaatcatttcttctaatattattcagaaaaaacttttcacagttctttagactgcacaatgcaatggaaataatcaattctaccagtacgtcttcagtcttcactaacttgtgatttggtaaaatcctcag
- - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - GGAGAA