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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATATGAGAAAGGACTGATGATAGCAGTCATTCCATTCACTTCAAAGgtttggattgttctcgtctctatagaacatgttactcaggcatgcttattatcataaccagtaattgcactgcag

Basic information

species Oryza sativa
transcript LOC_Os03g01240.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 20
lower sequence: GRMZM2G419699_T01 (Zea mays), 5'ss of exon 4
GCATATGAGAAAGGACTGATGATAGCAGTCATTCCATTCACTTCAAAGgtttggattgttctcg---tctctatagaacatgttactcaggcatgcttattatcataaccagt--aattgcactgcag------------------------------------------------
||||||||||||||| ||||||| || ||||| ||||||||||||||||| |  |||  |       | | | || || || |  |  | |  | |    |     ||| ||   ||    | | ||                                                 
GCATATGAGAAAGGATTGATGATTGCGGTCATACCATTCACTTCAAAGgtgtccattcctactaacttttttgtaaaatatttctccaaagattacaatctgattaaactagctcaaagaaaatccaattattaacttgggtgcatcatgagtcatgaccattggctgctctgcag

upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 20
lower sequence: GRMZM2G179406_T01 (Zea mays), 5'ss of exon 7
GCATATGAGAAAGGACTGATGATAGCAGTCATTCCATTCACTTCAAAGgtttggattgttctcg----tctctatagaacatgttactcaggcatgcttattatcataaccagt--aattgcactgcag------------------------------------------------
||||||||||||||| ||||||| || ||||| ||||||||||||||||| |  |||  |        | | | || || || |  |  | |  | |    |     ||| ||   ||    | | ||                                                 
GCATATGAGAAAGGATTGATGATTGCGGTCATACCATTCACTTCAAAGgtgtccattcctgctaactttttttgtaaaatatttctccaaagattacaatctgattaaactagctcaaagaaaatccaattattaacttgggtgcatcatgagtcatgaccattggctgctctgcag

upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 20
lower sequence: GRMZM2G435765_T02 (Zea mays), 5'ss of exon 3
GCATATGAGAAAGGACTGATGATAGCAGTCATTCCATTCACTTCAAAGgtttggatt---gttctcgtctctatagaacatgttactcaggcatgcttattatcataaccagt--aattgcactgcag------------------------------------------------
||||||||||||||| ||||||| || ||||| ||||||||||||||||| |  |||   | |  | | | | || || || |  |  | |  | |    |     ||| ||   ||    | | ||                                                 
GCATATGAGAAAGGATTGATGATTGCGGTCATACCATTCACTTCAAAGgtgtccattcctgctaacttttttgtacaatatttctccaaagattacaatctgattaaactagctcaaagaaaatccaattattaacttgggtgcatcatgagtcatgaccattggctgctctgcat

upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 20
lower sequence: GRMZM2G414487_T01 (Zea mays), 5'ss of exon 6
GCATATGAGAAAGGACTGATGATAGCAGTCATTCCATTCACTTCAAAGgtttggattgttctcg----tctctatagaacatgttactcaggcatgcttattatcataaccagt--aattgcactgcag------------------------------------------------
|||| |||||||||| ||||||| || ||||| ||||||||||||||||| |  |||  |        | | | || || || |  |  | |  | |    |     ||| ||   ||    | | ||                                                 
GCATGTGAGAAAGGATTGATGATTGCGGTCATACCATTCACTTCAAAGgtgtccattcctgctaactttttttgtaaaatatttctccaaagattacaatctgattaaactagctcaaagaaaatccaattatttacttgggtgcatcatgagtcatgaccattggctgctctgcag

upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 20
lower sequence: GRMZM2G457909_T01 (Zea mays), 5'ss of exon 5
GCATATGAGAAAGGACTGATGATAGCAGTCATTCCATTCACTTCAAAGgtttggatt---gttctcgtctctatagaacatgttactcaggcatgcttattatcataaccag--taattgcactgcag------------------------------------------------
||||||||||||||| ||||||| |  ||||| ||||||||||||||||| |  |||   | |  | | | | || || || |  |  | |  | |    |     ||| ||  |||    | | ||                                                 
GCATATGAGAAAGGATTGATGATTGTGGTCATACCATTCACTTCAAAGgtgtccattcctgctaacttttttgtaaaatatttctccaaagattacaatctgattaaactagcttaaagaaaatccaattattaacttgggtgcatcatgagtcatgaccattggctgctctgcag

upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 20
lower sequence: GRMZM2G435765_T01 (Zea mays), 5'ss of exon 7
GCATATGAGAAAGGACTGATGATAGCAGTCATTCCATTCACTTCAAAGgtttggatt---gttctcgtctctatagaacatgttactcaggcatgcttattatcataaccagt--aattgcactgcag--------------------
||||||||||||||| ||||||| || ||||| ||||||||||||||||| |  |||   | |  | | | | || || || |  |  | |  | |    |     ||| ||   ||    | | ||                     
GCATATGAGAAAGGATTGATGATTGCGGTCATACCATTCACTTCAAAGgtgtccattcctgctaacttttttgtacaatatttctccaaagattacaatctgattaaactagctcaaagaaaatccaattattaacttgggtgcatca

upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 20
lower sequence: AC196144.3_FGT002 (Zea mays), 5'ss of exon 4
GCATATGAGAAAGGACTGATGATAGCAGTCATTCCATTCACTTCAAAGgtttggattgttctcg----tctctatagaacatgttactcaggcatgct-tattatcataaccagt--aattgcactgcag-------------------
||||||||||||||| ||||||| || ||||| ||||||||||||||||| |  |||  |        | | | || || || |  |  | |  | |  ||| || | ||| ||   ||    | | ||                    
GCATATGAGAAAGGATTGATGATTGCGGTCATACCATTCACTTCAAAGgtgtccattcctgctaactttttttgtaaaatatttctccaaagattacaatatgatta-aactagctcaaagaaaatccaattattaacttgggtgcatc

upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 20
lower sequence: GRMZM2G481210_T01 (Zea mays), 5'ss of exon 3
GCATATGAGAAAGGACTGATGATAGCAGTCATTCCATTCACTTCAAAGgtttggatt---gttctcgtctctatagaacatgttactcaggcatgcttattatcataaccagt--aattgcactgcag------------------------------------------------
||||||||||||||| ||||||| || ||||| ||||||||||||||||| |  |||   | |  | | | | || || || |  |  | |  | |    |     ||| ||   ||    | | ||                                                 
GCATATGAGAAAGGATTGATGATTGCGGTCATACCATTCACTTCAAAGgtgtccattcctgctaacttttttgtaaaatatttctccaaagattacaatctgattaaactagctcaaagaaaatccaattattaacttgggtgcatcatgagtcatgaccattggctgctctgcag

upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 20
lower sequence: PP1S85_31V6.1 (Physcomitrella patens), 5'ss of exon 21
GCATATGAGAAAGGACTGATGATAGCAGTCATTCCATTCACTTCAAAGgtttggattgttctcgtctctatagaacatgttactcaggcatgc--ttattatcataaccagtaattgcactgcag-------------------------
||||||||||||||||||||||| ||| | ||||| ||||| || |||||     |  || ||   | |  | ||  ||||  || | |||    ||| ||    |    | |  |   ||                             
GCATATGAGAAAGGACTGATGATTGCAATTATTCCTTTCACATCCAAGgtaccc-tccttatcaaatgtg-aaaatttgttcatctgacatcacgttaatactgaagtttgcaggtcttctttttgtgtagttatattccatgtcagaca