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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCGTGGTTGATTCAAAGATATGCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagcttttctgcacttacaaatattacttctccgcaacaaaaaaaacattcttttacaagatgaaatggacttgattttactttatgctatttttag

Basic information

species Oryza sativa
transcript LOC_Os02g45070.1
intron # 20
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218479705|gb|FG950878.1|FG950878
EST:     GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG                         GAAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: gi|88960427|gb|CI006388.1|CI006388
EST:     GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG                         GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: gi|86499428|gb|CI142061.1|CI142061
EST:     CCATCCTACTGAGTTTGATTTCTACCTGTGTAACCATGCGGGCATTCAG                         GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
genomic: CCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: gi|58673688|gb|CK062374.1|CK062374
EST:     GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG                         GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: gi|86541213|gb|CI181419.1|CI181419
EST:     GCGGGCATTCAG                         GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACGAGTTC
genomic: GCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: gi|14571449|gb|BI118817.1|BI118817
EST:     GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG                         GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: gi|38469760|gb|CF953891.1|CF953891
EST:     GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG                         GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: gi|86430935|gb|CI083358.1|CI083358
EST:     TGTGTAGCCATGCGGGCATTCAG                         GGAACAAGTCGCCCTGCACATTATCAGGTTCTGTGGGATGAGAACAAGTTC
genomic: TGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: gi|218488951|gb|FG960688.1|FG960688
EST:     GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG                         GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: gi|14571456|gb|BI118824.1|BI118824
EST:     GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG                         GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: gi|29669480|gb|CB665755.1|CB665755
EST:     GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG                         GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: gi|58599567|gb|CK010095.1|CK010095
EST:     GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG                         GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: gi|29657069|gb|CB653344.1|CB653344
EST:     GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG                         GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: gi|86521035|gb|CI161241.1|CI161241
EST:     GCCATCCTACTGAGTGTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG                         GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
EST: gi|29626579|gb|CB631590.1|CB631590
EST:     GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAG                         GGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC
genomic: GCCATCCTACTGAGTTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGgtcagctttt ... ctatttttagGGAACAAGTCGCCCTGCACATTATCATGTTCTGTGGGATGAGAACAAGTTC