1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GGTGTTCTGCACTGGGTTGCTCAGCCAGCACCTGGAGTTGAACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcaccacttgccattctttccgttattacaaatgtgcgttgcacttgaaattcaccttagtgacataattcctatggattctctttcctgtgcaccatttag
species | Oryza sativa |
transcript | LOC_Os01g09000.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: GAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|86431241|gb|CI083664.1|CI083664
genomic: GAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|88197986|gb|CI197836.1|CI197836
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|86430461|gb|CI082884.1|CI082884
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|29673631|gb|CB669906.1|CB669906
genomic: AAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|86495415|gb|CI138048.1|CI138048
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|87017890|gb|CI273912.1|CI273912
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|86895282|gb|CI331220.1|CI331220
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: CTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|86478328|gb|CI120961.1|CI120961
genomic: CTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|88232271|gb|CI230729.1|CI230729
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|29660827|gb|CB657102.1|CB657102
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: ACCACTTAAGGTGGAAAGTA-GATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTEST: gi|29660828|gb|CB657103.1|CB657103
genomic: ACCACTTAAGGTGGAA-GTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACT
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|87030255|gb|CI270265.1|CI270265
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|88967128|gb|CI392090.1|CI392090
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|86482312|gb|CI124945.1|CI124945
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|88197825|gb|CI197675.1|CI197675
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|88273491|gb|CI393897.1|CI393897
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|87041341|gb|CI195963.1|CI195963
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|58587067|gb|CF985375.1|CF985375
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|86597706|gb|CI274697.1|CI274697
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAAEST: gi|88966267|gb|CI119402.1|CI119402
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
EST: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAG AATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
genomic: AACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcacc ... caccatttagAATCCTGCTGAACTGGAGGATTGGCTGGGTGATCTTAACCCGAACTCAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTTCTGCACTGGGTTGCTCAGCCAGCACCTGGAGTTGAACCACTTAAGGTGGAAGTAAGATTATTTGATAAATTATTCCTCTCTGAGgtatttcaccacttgccattctttccgttattacaaatgtgcgttgcacttgaaattcaccttagtgacataattcctatggattctctttcctgtgcaccatttag
- - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG