1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatcatgataaatgatcattactcactcaagagtcatatgttcaaaccttatctatccaatgcaattctccttttcatgatactactgtggtttc...
species | Oryza sativa |
transcript | LOC_Os12g43950.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAG GGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCTEST: gi|88743444|gb|CI766952.1|CI766952
genomic: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatca ... tcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCT
EST: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAG GGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCTEST: gi|88735596|gb|CI759104.1|CI759104
genomic: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatca ... tcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCT
EST: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAG GGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCTEST: gi|29629670|gb|CB634679.1|CB634679
genomic: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatca ... tcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCT
EST: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAG GGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCT
genomic: ACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatca ... tcaattgcagGGAAGTTGAACGGGATCAAGTTTAGTCTGGATAACAAAATATTGATGTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTGATTGGTAGCTGTGTTCGTAGCAATAACAGCCTGGCAGAGAATCTTTGAGAAGTTGCAGTCTATTAGTTCAACAAGgtactcatcatgataaatgatcattactcactcaagagtcatatgttcaaaccttatctatccaatgcaattctccttttcatgatactactgtggtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT