1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTTGAGCTGTCGCCGTCAACCCGAAGGAGTTTGCCGCCGCCGGACCTGTTCGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcctgcagcctataaaacatacatgcatgcatttctttgggtagatcaagtctatagcacgacatgcaccaccacccgaaaacgttttccgcc...
species | Oryza sativa |
transcript | LOC_Os12g42730.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACGEST: gi|29679033|gb|CB675308.1|CB675308
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACGEST: gi|29674623|gb|CB670898.1|CB670898
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACGEST: gi|29675652|gb|CB671927.1|CB671927
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACGEST: gi|29639895|gb|CB644904.1|CB644904
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACGEST: gi|29677656|gb|CB673931.1|CB673931
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACGEST: gi|29679976|gb|CB676251.1|CB676251
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACGEST: gi|38478499|gb|CF962632.1|CF962632
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACGEST: gi|29680084|gb|CB676359.1|CB676359
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
EST: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCG CTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
genomic: CGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcc ... ccatccgcagCTTTCCCTCCGGTGAAGCGGCCGCATGAGGACGACCTCGGCGCCGGTGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGAGCTGTCGCCGTCAACCCGAAGGAGTTTGCCGCCGCCGGACCTGTTCGCGAGCTATTACGGATGACCAAGCTTCGCCAACCTTTTCTAGAATCTCGgtgagcatcctgcagcctataaaacatacatgcatgcatttctttgggtagatcaagtctatagcacgacatgcaccaccacccgaaaacgttttccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT