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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGATTCTGAAGAACACTATTTACGACTACTTTGACAAGAATTTCTCTGGGAACTTTAACAAGTTCGATGACCTCTGCCCTCTTGTTTCTATCAAGCAGgtatgagttagcagttggcctgatgtgttcaactgcttattccttcccttttgtgctgatttccactgggctagtgaatttcgctttgtgcacttgtttttctttttttcagattctcgcacaccttgtgtaacagtgtactttgaaccatatgattattgctgaccccaaggtcatgcttgctgcag

Basic information

species Oryza sativa
transcript LOC_Os12g34860.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g34860.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AC211349.4_FGT001 (Zea mays), 5'ss of exon 2
AGGGATTCTGAAGAACACTATTTACGACTACTTTGACAAGAATTTCTCTGGGAACTTTAACAAGTTCGATGACCTCTGCCCTCTTGTTTCTATCAAGCAGgtatgagttagcagttg-gcctgatg-tgttcaactgct-tattccttcccttttgtgctgatt-tccactgggctagtgaatttcgctttgtgcacttgtttttctttttttcagattctcgcacaccttgtgtaacagtgtactttgaaccatatgattattgctgaccccaaggtcatgcttgctgcag
 |||||| |||||||||| ||||| || |||||||||||||| ||| ||||| | ||| ||||||| |||||||| ||||||||||||||| ||||||||||||||| |   | |||    |  |  | || ||  | | ||| |  |      | | || ||  || ||||   ||||    ||  | ||  |  |||                                                                                             
TGGGATTTTGAAGAACACAATTTATGATTACTTTGACAAGAACTTCACTGGGCAGTTTGACAAGTTTGATGACCTTTGCCCTCTTGTTTCTGTCAAGCAGgtatgaggtgcaaattgcatgtagtaatattgaatcgatatatgctattttgcatctactaataatcaactgcagtagtagtattacccttaaggcctta--------------------------------------------------------------------------------------------

upper sequence: LOC_Os12g34860.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G078756_T02 (Zea mays), 5'ss of exon 2
AGGGATTCTGAAGAACACTATTTACGACTACTTTGACAAGAATTTCTCTGGGAACTTTAACAAGTTCGATGACCTCTGCCCTCTTGTTTCTATCAAGCAGgtatgagttagcagttg-gcctgatg-tgttcaactgct-tattccttcccttttgtgctgatt-tccactgggctagtgaatttcgctttgtgcacttgtttttctttttttcagattctcgcacaccttgtgtaacagtgtactttgaaccatatgattattgctgaccccaaggtcatgcttgctgcag
 ||||||||||||||||| ||||| || |||||||||||||| ||| ||||  | ||| ||||||| |||||||| ||||| ||||||||| ||||||||||||||| ||  | |||    |  |  | || |   | | ||| |  | |   || |||| ||  || ||||    ||     | | |||     | |                                                                                              
TGGGATTCTGAAGAACACAATTTATGATTACTTTGACAAGAACTTCACTGGACAGTTTGACAAGTTTGATGACCTTTGCCCCCTTGTTTCTGTCAAGCAGgtatgaggtacaaattgcatgtagtaatatttagtggatatatgctattctgcttctgctaatgatcaactgcagcagcagtatacccttaacaaagtac--------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29629251|gb|CB634262.1|CB634262
EST:     GGAACTTTAACAAGTTCGATGACCTCTGCCCTCTTGTTTCTATCAAGCAG                         AATTTTGATGATGTCCTGGTCCCTGCTGATCATGTGAGTCGGAGTTACAAT
genomic: GGAACTTTAACAAGTTCGATGACCTCTGCCCTCTTGTTTCTATCAAGCAGgtatgagtta ... cttgctgcagAATTTTGATGATGTCCTGGTCCCTGCTGATCATGTGAGTCGGAGTTACAAT
EST: gi|29662500|gb|CB658775.1|CB658775
EST:     GGAACTTTAACAAGTTCGATGACCTCTGCCCTCTTGTTTCTATCAAGCAG                         AATTTTGATGATGTCCTGGTCCCTGCTGATCATGTGAGTCGGAGTTACAAT
genomic: GGAACTTTAACAAGTTCGATGACCTCTGCCCTCTTGTTTCTATCAAGCAGgtatgagtta ... cttgctgcagAATTTTGATGATGTCCTGGTCCCTGCTGATCATGTGAGTCGGAGTTACAAT