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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCTGGGATCAAGCTCAATGAAGTACCCTGGCCAGCCTCAGGAGATCCCTGTCTTTCAGAACAGCACATTTACTATCCCTGTAAATGATCCTCACCAGgtaaaacatgttggattttattttggtgggatgtgcaatttacatcgaagtgtttaattacattatgtttcgattttttatcgcag

Basic information

species Oryza sativa
transcript LOC_Os12g34450.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g34450.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G116204_T01 (Zea mays), 5'ss of exon 3
CTTTCTGGGATCAAGCTCAATGAAGTACCCTGGCCAGCCTCAGGAGATCCCTGTCTTTCAGAACAGCACATTTACTATCCCTGTAAATGATCCTCACCAGgtaaaacatgttggattttattttggtgggatgtgcaatttacatcgaagtgtttaattacattatgtttcgattttttatcgcag-----------------------------------------------------------------------------------------
|||  |||||||||||||| | |||||||| || ||||| ||||| || ||| |||||||||| | ||||||| | ||||||||||||||||| |||||||||||  |  |  | | ||| ||   ||   | |   | ||     ||    || |  | | | || |   | || | | |  | |                                                                                         
CTTGATGGGATCAAGCTCACTAAAGTACCCAGGGCAGCCACAGGAAATTCCTTTCTTTCAGAATACCACATTTTCAATCCCTGTAAATGATCCACACCAGgtaaaggaaatgagttattacttatatgcatttt--tactttttctgatacatt-agatgcctcatatcctggttatatttaactgtaacttggccagatttcaacatgtaaatttattttggtgggtaggaaattgatctttttgttaatgtatacatcatctttctcttgcag

upper sequence: LOC_Os12g34450.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G078508_T01 (Zea mays), 5'ss of exon 3
CTTTCTGGGATCAAGCTCAATGAAGTACCCTGGCCAGCCTCAGGAGATCCCTGTCTTTCAGAACAGCACATTTACTATCCCTGTAAATGATCCTCACCAGgtaaaacatgttggattttattttggtgggatgtgcaatttacatcgaagtgtttaattacattatgtttcgattttt-tatcgcag-------------------------------------------------------------------------------------------------
||| || || || |||||  |||||||||| || ||||| |||||  | || ||||||||||| | ||||||| | ||||||||||||||||| || ||||||||| |    || | | ||||   ||  || |  | |||   |   |  ||     ||  |  |||   |||||    | | | |                                                                                                 
CTTACTCGGGTCGAGCTCGCTGAAGTACCCAGGACAGCCGCAGGAAGTTCCCGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagagaagggttgtcatttatatgc-atttttactttgtctgatacagt---gatatctcgtgtcctgatttgcacaactctgctgattatatggtactgtaccttggctagttttaagatattgttggagcttgggtagggtcaatttgttagtgtctacatctttctctttcttgcag

upper sequence: LOC_Os12g34450.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G064371_T03 (Zea mays), 5'ss of exon 3
CTTTCTGGGATCAAGCTCAATGAAGTACCCTGGCCAGCCTCAGGAGATCCCTGTCTTTCAGAACAGCACATTTACTATCCCTGTAAATGATCCTCACCAGgtaaaacatgttggattttattttggtgggatgt-gcaatttacatcgaagtgtttaattacattatgtttcgattttttatcgcag----------------------------------------------------------------------------------------------
||| || || || |||||  |||||||||| || ||||| |||||  | |||||||||||||| | ||||||| | ||||||||||||||||| || ||||||||| |    || | | ||||   ||   | |  |  | |       |||| |   |    |  || || |      | |                                                                                                   
CTTACTCGGGTCGAGCTCGCTGAAGTACCCAGGACAGCCGCAGGAAGTTCCTGTCTTTCAGAATACCACATTTTCGATCCCTGTAAATGATCCACATCAGgtaaaagagaagggttgtcatttatatgcacttttactttgtctgatacagtgatatctcgtgtcctgatttgcacaactctgctgattatatggtactgtacctttgctagttttaagatattgttggagcttgggtagggcctatttgttagtgtctatcatctttctctttcttgcag